GitHub topics: gromacs
Heiley-W/GROMACS-Tutorials
GROMACS tutorials for molecular dynamic (MD) simulations
Language: Jupyter Notebook - Size: 371 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0
graeter-group/kimmdy
Reactive MD pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)
Language: Python - Size: 51.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 12 - Forks: 4
Colvars/colvars
Collective variables library for molecular simulation and analysis programs
Language: C++ - Size: 51 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 231 - Forks: 59
virtualramblas/gromacs_smolagent
An HF's Smolagent to automate molecular dynamics simulations using GROMACS.
Language: Python - Size: 355 KB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 3 - Forks: 0
KaneGreen/GROMACS-Windows-Builder
Size: 67.4 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 7 - Forks: 1
openforcefield/openff-interchange
A project (and object) for storing, manipulating, and converting molecular mechanics data.
Language: Python - Size: 6.68 MB - Last synced at: 1 day ago - Pushed at: 4 days ago - Stars: 79 - Forks: 25
LABIOQUIM/visualdynamics
Web Platform made with Python and NextJS for automating GROMACS simulations
Language: TypeScript - Size: 156 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 35 - Forks: 7
AspirinCode/awesome-AI4MolConformation-MD
List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning
Size: 4.3 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 238 - Forks: 21
N720720/lindemann
lindemann is a python package to calculate the Lindemann index of a lammps trajectory
Language: Python - Size: 20.5 MB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 5
patrickallanfaustino/tutorials-md
Tutorials molecular dynamics.
Language: Makefile - Size: 6.2 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0
patrickallanfaustino/tutorials-workstation
Tutorials workstation for MD.
Size: 14.6 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 1 - Forks: 0
patrickallanfaustino/patrickallanfaustino
Personal repo
Size: 1.51 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0
ci-lab-cz/streamd
Fully automated high-throughput MD pipeline
Language: Python - Size: 6.47 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 69 - Forks: 15
alanwilter/acpype
OFFICIAL: AnteChamber PYthon Parser interfacE
Language: Python - Size: 287 MB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 235 - Forks: 54
ma3ke/molly
Read xtc files, fast.
Language: Rust - Size: 171 MB - Last synced at: 20 days ago - Pushed at: 26 days ago - Stars: 5 - Forks: 1
HECBioSim/Longbow
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
Language: Python - Size: 8.03 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 17 - Forks: 3
Edinburgh-Chemistry-Teaching/MD_ResearchTechniques
Materials for the "Introduction to Computational Chemistry Techniques" course at the University of Edinburgh
Language: HTML - Size: 277 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 2 - Forks: 3
votca/votca
The source of the votca-csg and xtp packages
Language: C++ - Size: 124 MB - Last synced at: 2 days ago - Pushed at: 26 days ago - Stars: 52 - Forks: 30
Ladme/gcenter
Center Any Group in a Gromacs Trajectory
Language: Rust - Size: 18.2 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 0
Ladme/gorder
Calculate lipid order parameters from Gromacs simulations
Language: Rust - Size: 333 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 5 - Forks: 1
Ladme/groan_rs
Gromacs Analysis Library for Rust
Language: Rust - Size: 26.5 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 6 - Forks: 0
Becksteinlab/GromacsWrapper
GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).
Language: Python - Size: 11.9 MB - Last synced at: 25 days ago - Pushed at: about 2 months ago - Stars: 179 - Forks: 54
recombinatrix/UA-memb-tutorial
A gromacs tutorial for creating a gromos54A7 simulation system of a protein in a simple membrane
Language: Shell - Size: 6.21 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
paulshamrat/ColabMDA
User friendly molecular dynamics simulation combining GROMACS and Google Colab: A complete guide
Language: Jupyter Notebook - Size: 113 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 14 - Forks: 4
ibrahim-mohd/Add-NME-ACE-residues-to-protein-terminal-residues
Add NME and ACE chemical groups to protein terminal residues
Language: Python - Size: 43.9 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 1
liuyujie714/gplt
gplt for plotting gromacs output files
Language: Python - Size: 10.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0
Yuanming-Song/gmx2charmm
GROMACS to CHARMM Force Field File Converter
Language: Rich Text Format - Size: 10.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
Arifmaulanaazis/Gromacs-Prebuild-Windows
Gromacs prebuild for windows
Size: 15.6 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
Marcello-Sega/pytim
a python package for the interfacial analysis of molecular simulations
Language: Python - Size: 207 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 91 - Forks: 37
m3g/ComplexMixtures.jl
Package to perform minimum-distance distribution analyses of complex solute-solvent interactions
Language: Julia - Size: 60.9 MB - Last synced at: 3 days ago - Pushed at: 2 months ago - Stars: 20 - Forks: 3
simongravelle/nmrformd
NMRforMD is a python script for the calculation of NMR relaxation time T1 and T2 from molecular dynamics trajectory file.
Language: Python - Size: 309 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 26 - Forks: 5
bio-phys/MDBenchmark
Quickly generate, start and analyze benchmarks for molecular dynamics simulations.
Language: Python - Size: 1.29 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 80 - Forks: 17
gromacstutorials/gromacstutorials.github.io
Repository of the gromacstutorials webpage
Size: 175 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 11 - Forks: 1
pritampanda15/GROMACS-StepWizard
Calculate exact number of steps for your GROMACS molecular dynamics simulations .mdp files
Language: Python - Size: 5.86 MB - Last synced at: about 8 hours ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0
weitse-hsu/enhanced_sampling_tutorials
A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling methods using GROMACS
Language: Jupyter Notebook - Size: 4.93 MB - Last synced at: 23 days ago - Pushed at: 12 months ago - Stars: 20 - Forks: 2
Jerkwin/gmxtools
tools for GROMACS
Language: HTML - Size: 50.7 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 117 - Forks: 53
Arifmaulanaazis/gmxauto
Gromacs automatic tool from CHARMM-GUI input
Language: Python - Size: 4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
echizen121/delta-helix
Novel Δ-helix peptide structures derived from resilin, including MD results and licensing
Size: 1.11 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
Valdes-Tresanco-MS/gmx_MMPBSA
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
Language: Python - Size: 330 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 265 - Forks: 74
Zuttergutao/GMXAnalysis
For the purpose of post progressing of MD carried by gromacs
Language: Jupyter Notebook - Size: 37.5 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 22 - Forks: 4
rjdkmr/gmx_clusterByFeatures
Features Based Conformational Clustering of MD trajectories. See details at:
Language: C++ - Size: 14.1 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 8 - Forks: 1
janjoswig/MDParser
Parsers for Molecular Dynamics related file types
Language: Python - Size: 345 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 6 - Forks: 1
jotelha/jlhphd
Contains input files and workflows underlying J. L. Hörmann, C. (刘宸旭) Liu, Y. (孟永钢) Meng, and L. Pastewka, “Molecular simulations of sliding on SDS surfactant films,” The Journal of Chemical Physics, vol. 158, no. 24, p. 244703, Jun. 2023, doi: 10.1063/5.0153397. as well as an installable Python package jlhpy.
Language: Jupyter Notebook - Size: 161 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 1 - Forks: 0
dnlbauer/xdrfile
Rust Wrapper around the GROMACS libxdrfile library. A low level api to read and write molecular trajectories in .xtc and .trr format.
Language: Rust - Size: 354 KB - Last synced at: 5 days ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 1
qcgurv/topoMOx
TopoMOx, topologies for metal oxides
Language: Python - Size: 1.69 MB - Last synced at: 1 day ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
Becksteinlab/MDPOW
Calculation of water/solvent partition coefficients with Gromacs.
Language: Python - Size: 739 MB - Last synced at: 3 days ago - Pushed at: 11 months ago - Stars: 28 - Forks: 9
jbarnoud/simoji
Run a GROMACS simulation with emojis!
Language: Python - Size: 23.4 KB - Last synced at: 5 days ago - Pushed at: about 8 years ago - Stars: 4 - Forks: 0
Ajax23/PoreMS
Pore generator for molecular simulations.
Language: Python - Size: 29.5 MB - Last synced at: 21 days ago - Pushed at: 5 months ago - Stars: 7 - Forks: 4
rjdkmr/do_x3dna
To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.
Language: Python - Size: 129 MB - Last synced at: 14 days ago - Pushed at: 5 months ago - Stars: 26 - Forks: 10
OtoYuki/proteus
Proteus: A Django-based web application for a semi-automated computational pipeline in synthetic protein design, integrating ColabFold, GROMACS, and ML ranking.
Language: JavaScript - Size: 2.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
jag1g13/pycgtool
Generate coarse-grained molecular dynamics models from atomistic trajectories.
Language: Python - Size: 6.39 MB - Last synced at: 2 days ago - Pushed at: over 2 years ago - Stars: 64 - Forks: 13
mogura-rs/mogura
A molecular graphic toy visualizer in Rust
Language: Rust - Size: 31.7 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 0
Ladme/minitpr
Library for Reading Gromacs TPR Files
Language: Rust - Size: 3.96 MB - Last synced at: 8 days ago - Pushed at: 4 months ago - Stars: 3 - Forks: 0
ur-whitelab/peptidesim
Automated peptide simulation tool with gromacs, gromacswrapper, plumed
Language: Python - Size: 890 KB - Last synced at: 1 day ago - Pushed at: about 4 years ago - Stars: 8 - Forks: 1
NMRDfromMD/nmrdfrommd.github.io
This repository contains the documentation for the NMRDfromMD Python package.
Size: 37.7 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0
weitse-hsu/REMD_analysis
A repository for the development of data analysis tools for replica exchange molecular dynamics (REMD) simulations
Language: Python - Size: 11.4 MB - Last synced at: 23 days ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 9
simongravelle/publication-data
Data and scripts from recent publications
Language: Jupyter Notebook - Size: 103 MB - Last synced at: 6 days ago - Pushed at: 5 months ago - Stars: 8 - Forks: 0
RNA-FRETools/fretlabel
Nucleic acid fluorescence labeling for all-atom MD simulations
Language: Python - Size: 57 MB - Last synced at: 9 days ago - Pushed at: 5 months ago - Stars: 5 - Forks: 2
yurayura-nmr/chikaterasu-martini
Simple bash script to generate and analyze coarse-grained protein molecular dynamics trajectories using GROMACS tools
Language: Python - Size: 583 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
liyigerry/gmx
molecular dynamics simulation and analysis. 分子动力学模拟和分析。
Language: Jupyter Notebook - Size: 28.6 MB - Last synced at: 5 months ago - Pushed at: almost 6 years ago - Stars: 39 - Forks: 9
simongravelle/PEGgenerator
Generate PEG topology for GROMACS and LAMMPS
Language: Jupyter Notebook - Size: 511 KB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 21 - Forks: 6
mixcoha/cha-MD-ba
CHA-MD-BA: Pipeline de Simulación de Dinámica Molecular para el Análisis de Proteínas
Language: Shell - Size: 85.9 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
pierrepo/grodecoder
GroDecoder extracts and identifies the molecular components of a structure file (PDB or GRO) issued from a molecular dynamics simulation.
Language: Python - Size: 22.6 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 1
Kitaolab/PaCS-Toolkit
PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis
Language: Python - Size: 1.68 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 17 - Forks: 4
simongravelle/gallery
Molecular art
Language: Jupyter Notebook - Size: 114 MB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 0
Tushar98644/Ribo-Replicator
Generation and visualization of 3d protein sequences
Language: TypeScript - Size: 812 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0
GMPavanLab/Swarm-CG
Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-Tuning Particle Swarm Optimization
Language: Python - Size: 32.1 MB - Last synced at: 16 days ago - Pushed at: about 1 year ago - Stars: 45 - Forks: 12
MDAnalysis/imd-workshop-2024
Materials for the virtual 2024 MDAnalysis IMD streaming workshop.
Language: Jupyter Notebook - Size: 25.5 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 7 - Forks: 1
andthum/lintf2_ether_ana_postproc
Analysis postprocessing utilities for my molecular dynamics simulations of LiTFSI-Ether mixtures
Language: Python - Size: 1.22 MB - Last synced at: 1 day ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0
andthum/transfer_Li
Transfer Li ions from cathode to anode in MD simulations
Language: Shell - Size: 201 KB - Last synced at: 1 day ago - Pushed at: 19 days ago - Stars: 2 - Forks: 0
alec-glisman/Polyelectrolyte-Surface-Adsorption
PLUMED-patched GROMACS molecular dynamics simulations repository used for my anti-scaling research project in the Wang Group.
Language: Shell - Size: 234 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
Erastova-group/ClayCode
automate the setup of atomistic clay models for classical molecular dynamics simulations with GROMACS
Language: Python - Size: 27.9 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 7 - Forks: 2
ravenswing/mdsaps
Molecular Dynamics - Simulation Analysis and Preparation Suite
Language: Python - Size: 1020 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 0
simongravelle/gromacs-input-files
GROMACS input files
Size: 16.7 MB - Last synced at: 7 months ago - Pushed at: over 2 years ago - Stars: 18 - Forks: 8
andreyrcdias/lysozyme-in-water
Simulation system containing a protein (lysozyme) in a box of water with ions
Language: Shell - Size: 6.84 KB - Last synced at: 5 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
AglowRaph/Gromacs-xvg-plot-script
A Python script for automating the plotting of .xvg files from GROMACS simulations, with dynamic labeling, time unit detection, and colorful visualization. This script reads, plots, and saves each .xvg file in the same directory, making data analysis more efficient.
Language: Python - Size: 10.7 KB - Last synced at: 6 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
c-vandenberg/gromacs-tutorials
Introductory GROMACS project that sets up the topology, energy minimisation, NVT and NPT equilibration and molecular dynamics simulation of the small protein 'Coagulation Factor Xa' in ionised water.
Language: Jupyter Notebook - Size: 79.3 MB - Last synced at: 2 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
Peppone98/Mpro_H164N
Project of the Computational Biophysics exam @ Unitn. We simulated the SARS-CoV-2 main protease Mpro with the H164N mutation in complex with two CG-376 ligands
Size: 9.12 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
Stanvk/Widom_Particle_Insertion
A Python Package to perform Widom's Test-Particle method on molecular-dynamics simulation data
Language: Python - Size: 80.1 KB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
QDcvd/Gromacs-xvg2csv-Printer
利用xvg生成的csv文件进行画图的脚本
Language: Python - Size: 724 KB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 0
alec-glisman/Simulation-Two-Chain-PAA
Simulate interactions between two fully-charged PAA chains with varying amounts of CaCl2 added
Language: Shell - Size: 88.9 MB - Last synced at: about 23 hours ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
martincalvelo/MARTINI-CG-TUTORIALS
Repository of tutorials on Coarse-Grained Molecular Dynamics (CG-MD) using the Martini 3 force field, designed for running on Google Colab
Language: Jupyter Notebook - Size: 2.09 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mckeownish/GRO-Up
Shell script to prepare protein PDBs for GROMACS molecular dynamics simulations, with SLURM script included to run md with hpc
Language: Shell - Size: 162 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
MDAnalysis/pytng
Python bindings for TNG file format
Language: C - Size: 17.4 MB - Last synced at: 13 days ago - Pushed at: 10 months ago - Stars: 13 - Forks: 5
rcoteru/small-submission
Assignment to evaluate skills and knowledge on MD simulations.
Language: TeX - Size: 2.26 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
kimjc95/addNewResidue.py
This code adds custom-made amino acids to the GROMACS forcefield directory.
Language: Python - Size: 2.79 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 2
gromacstutorials/.github
GROMACS tutorials for both beginners and advanced users
Size: 15.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
4ndrecarvalho/SILVIA
Modeling the synthesis of SILica materials VIA multiscale computer simulation. (implementation in MARTINI forcefield)
Language: Python - Size: 53.7 KB - Last synced at: 7 months ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 1
CreedxAsif/MD-Trajectory-Analysis-Bio3D
This tutorial provides a comprehensive walk around to performing molecular dynamics (MD) trajectory analysis using the Bio3D package in R.
Size: 10.7 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
JureCerar/atomlib
Modern Fortran library for processing molecular files.
Language: Fortran - Size: 118 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GuerrSim96/MDS-pVT
A user friendly system for molecular dynamics in both aqueous and membrane-like environment.
Language: Jupyter Notebook - Size: 15.8 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Becksteinlab/AdKGromacsTutorial
Basic tutorial for running and analyzing a Gromacs MD simulation of AdK
Language: Shell - Size: 22 MB - Last synced at: 5 months ago - Pushed at: about 7 years ago - Stars: 9 - Forks: 7
Goosang-Yu/gmxpy
Wrapping GROMACS by python script for me
Language: Python - Size: 112 KB - Last synced at: 12 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
MolSSI/mmic_optim_gmx
Tactic MMIC for energy optimization using gmx
Language: Python - Size: 290 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 2
MolSSI/mmic_ffpa_gmx
Tactic MMIC for force field parameter assignment with gmx
Language: Python - Size: 83 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
kevinsawade/cleanup_sims
Cleans up messy Gromacs simulations
Language: Python - Size: 1.42 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
brendaferrari/automated-lysozyme-water-forcefields-GROMACS
Script developed to run the commands of the "Lysozyme in Water" tutorial in gromacs in different force fields at once
Language: Shell - Size: 34.2 KB - Last synced at: 1 day ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0
gxf1212/md-highlighter
a VScode syntax highlight tool for molecular dynamics
Size: 3.67 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
EnglishBeach/MolecularModeling
Part of the diploma.
Language: Jupyter Notebook - Size: 142 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
QDcvd/MDP-template-generator-for-Gromacs
用于生成用于gromacs计算的mdp、npt、nvt、em文件
Language: TeX - Size: 16.5 MB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0