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GitHub / yollct / spycone
Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yollct%2Fspycone
Stars: 7
Forks: 0
Open Issues: 2
License: gpl-3.0
Language: Python
Repo Size: 93.9 MB
Dependencies:
66
Created: over 2 years ago
Updated: 21 days ago
Last pushed: 8 months ago
Last synced: 21 days ago
Topics: alternative-splicing, isoform-switches, networks-biology, systems-biology, time-series, transcriptomics
Files
Dependencies
- biopython *
- commonmark ==0.9.1
- gseapy >=0.10.4
- joblib *
- matplotlib >=3.1.3
- nbsphinx *
- nease >=1.1.8
- networkx >=2.4
- numpy >=1.18.1
- pandas >=1.0.1
- pcst_fast >=1.0.7
- plotly >=4.14.3
- python-louvain *
- recommonmark ==0.6.0
- scikit-learn >=0.23.2
- scikit-learn-extra >=0.1.0
- scipy >=1.4.1
- seaborn *
- sphinx *
- sphinx-prompt ==1.3.0
- sphinx_rtd_theme *
- statsmodels >=0.11.0
- tslearn >=0.5
- biopython *
- gprofiler *
- gtfparse *
- joblib *
- matplotlib >=3.1.3
- nease *
- networkx >=2.4
- numpy >=1.19.0
- pandas >=1.0.1
- plotly >=4.14.3
- python-louvain *
- scikit-learn >=0.23.2
- scikit-learn-extra >=0.1.0
- scipy >=1.4.1
- seaborn *
- statsmodels >=0.11.0
- tslearn >=0.5.1.0
- matplotlib ==3.1.3
- networkx ==2.4
- numpy ==1.18.1
- pandas ==1.0.1
- pcst-fast ==1.0.7
- python-louvain ==0.14
- scipy ==1.4.1
- statsmodels ==0.11.0
- matplotlib ==3.1.3
- networkx ==2.4
- numpy ==1.18.1
- pandas ==1.0.1
- pcst-fast ==1.0.7
- python-louvain ==0.14
- scipy ==1.4.1
- statsmodels ==0.11.0
- gseapy >=0.10.4
- matplotlib >=3.4.1
- networkx >=2.5
- numpy >=
- pandas >=1.1.0
- plotly >=4.14.3
- scipy >=1.6.2
- statsmodels >=0.12.2
- actions/checkout v2 composite
- actions/setup-python v2 composite