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GitHub / zhengpuas47 / MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zhengpuas47%2FMERlin
Fork of emanuega/MERlin
Stars: 2
Forks: 1
Open Issues: 0
License: mit
Language: Python
Repo Size: 7.59 MB
Dependencies:
34
Created: about 3 years ago
Updated: 7 days ago
Last pushed: 7 days ago
Last synced: 7 days ago
Files
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Readme
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Dependencies
requirements.txt
pypi
- Shapely >=1.6.4.post2
- Sphinx *
- boto3 *
- cellpose *
- cython >=0.21
- docutils >=0.10
- google-cloud-storage *
- h5py >=2.10.0
- matplotlib >=3.3.0
- networkx *
- numexpr >=2.6.2
- opencv-python >=4.3.0.36
- pandas >=1.0.5
- pillow >=7.0.0
- pyclustering *
- pyqt5 >=5.15.0
- pytest >=4.6.0,<6.0.1
- pytest-cov *
- python-dotenv >=0.8.2
- requests >=2.18.0
- rtree >=0.9.4
- scikit-image >=0.17.2,<0.19
- scikit-learn >=0.19.0
- scipy >=1.5.1
- seaborn >=0.9.0
- setuptools >=36.0.0
- snakemake >=5.20.1
- sphinx-rtd-theme *
- tables >=3.6.1
- tifffile >=2019.7.26
- urllib3 *
- xmltodict *
setup.py
pypi