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GitHub / zijianni / SpotClean
R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zijianni%2FSpotClean
Stars: 14
Forks: 7
Open Issues: 2
License: None
Language: R
Repo Size: 4.01 MB
Dependencies:
26
Created: about 3 years ago
Updated: about 1 month ago
Last pushed: 7 months ago
Last synced: 21 days ago
Commit Stats
Commits: 104
Authors: 5
Mean commits per author: 20.8
Development Distribution Score: 0.452
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/zijianni/SpotClean
Topics: rna-seq, spatial-transcriptomics
Files
Dependencies
- R >= 4.2.0 depends
- Matrix * imports
- RColorBrewer * imports
- S4Vectors * imports
- Seurat * imports
- SpatialExperiment * imports
- SummarizedExperiment * imports
- dplyr * imports
- ggplot2 * imports
- grDevices * imports
- grid * imports
- methods * imports
- readbitmap * imports
- rhdf5 * imports
- rjson * imports
- rlang * imports
- stats * imports
- tibble * imports
- utils * imports
- viridis * imports
- BiocStyle * suggests
- R.utils * suggests
- knitr * suggests
- rmarkdown * suggests
- spelling * suggests
- testthat >= 2.1.0 suggests