GitHub topics: biodiversity-data

Repositories

SakinaJaffri/WWF-Inspired-Biodiversity-Dashboard-Project

🌍 The State of Global Biodiversity — Tableau Dashboard An interactive data visualization project analyzing species population trends from 1950–2020, built using the Living Planet Index (LPI). This dashboard explores biodiversity changes by country, ecosystem, and species — and reflects my passion for storytelling, analytics, and conservation.

Language: Jupyter Notebook - Size: 0 Bytes - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

AAFC-BICoE/object-store-api

AAFC DINA object-store implementation

Language: Java - Size: 41 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 4

pyinat/pyinaturalist

Python client for iNaturalist

Language: Python - Size: 14.4 MB - Last synced at: 3 days ago - Pushed at: 10 days ago - Stars: 140 - Forks: 17

pyinat/naturtag

Tag your nature photos with iNat taxonomy and observation metadata

Language: Python - Size: 114 MB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 40 - Forks: 4

riparias/gbif-alert

GBIF Alert is a GBIF occurrence based alert system.

Language: Python - Size: 21 MB - Last synced at: 7 days ago - Pushed at: about 2 months ago - Stars: 9 - Forks: 2

AAFC-BICoE/natural-history-collection-api

AAFC DINA Collection module implementation / Implémentation du module de Collection DINA de AAC

Language: Java - Size: 2.14 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 5 - Forks: 3

sformel/intro_to_DNA_data_publishing

An introductory course for publishing DNA to GBIF, using the Darwin Core standard.

Language: R - Size: 6.14 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

PoisotLab/NCBITaxonomy.jl

Wrapper around the NCBI taxonomy files

Language: Julia - Size: 2.83 MB - Last synced at: 14 days ago - Pushed at: 20 days ago - Stars: 7 - Forks: 2

pyinat/pyinaturalist-convert

Data conversion tools for iNaturalist observations and taxonomy

Language: Python - Size: 19.6 MB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 2

b-cubed-eu/euroraccoon

Generalized Additive Models (GAMs) for raccoon in Europe

Language: JavaScript - Size: 24.2 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0

b-cubed-eu/hackathon-projects-2024

This space is dedicated to hosting and showcasing all the projects submitted for the B-Cubed Hackathon 2024 - Hacking Biodiversity Data Cubes for Policy

Language: Jupyter Notebook - Size: 19.7 MB - Last synced at: 16 days ago - Pushed at: 28 days ago - Stars: 6 - Forks: 2

ABbiodiversity/wildrtrax

This is an R package that enables environmental sensor users to create comprehensive work flows for managing and analyzing data

Language: R - Size: 275 MB - Last synced at: about 15 hours ago - Pushed at: 3 days ago - Stars: 13 - Forks: 9

open-traits-network/open-traits-network.github.io

Open Traits Network Registry and Website

Language: CSS - Size: 156 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 13 - Forks: 58

arms-mbon/data_workspace

This repo is the working area for ARMS-MBON event and omics data: data are collected, harvested, combined, reformatted

Language: Python - Size: 57.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 1

NeoMapas/iNat-obs-dashboard

Language: HTML - Size: 8.16 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

Safeguarding-European-wild-pollinators/SafeguardEuropeanWildBee

This repository contains the scripts used to clean and process the spatial data of wild bees and hoverflies from the SAFEGUARD project. For more information, please see the data paper. The code is intended for reuse and modification under the MIT license, provided proper attribution is given.

Language: R - Size: 33.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

BNHM/berkeleymapper

Map specimens using simple XML configuration file and Google Maps API

Language: HTML - Size: 13.5 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 8 - Forks: 3

ropensci/occCite

Querying database aggregators and citing primary sources of resulting occurrence records.

Language: HTML - Size: 19.3 MB - Last synced at: 18 days ago - Pushed at: 6 months ago - Stars: 23 - Forks: 5

paleo-data/happy-hours

The purpose of this space is to provide the Paleo Data Working Group with a transparent way to keep track of topic ideas, and to schedule and plan happy hour events.

Size: 35.2 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

AAFC-BICoE/agent-api

AAFC DINA agent module implementation / Implémentation du module de Agent DINA de AAC

Language: Java - Size: 454 KB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 2

nainiayoub/XperTranslate

A tool to graphically visualize and translate Xper3 knowledge bases to many languages.

Language: Python - Size: 25.4 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

brunobrr/bdc

Check out the vignettes with detailed documentation on each module of the bdc package

Language: R - Size: 179 MB - Last synced at: 3 days ago - Pushed at: 4 months ago - Stars: 24 - Forks: 8

ArctosDB/arctos

Arctos is a museum collections management system

Size: 68.3 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 61 - Forks: 13

leisux/ipybd

Powerful Data Cleaner For Biodiversity

Language: Python - Size: 85.7 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 20 - Forks: 9

firms-gta/darwin_core_viewer

Generic Shiny app to map and plot Darwin Core files (from GBIF)

Language: R - Size: 15.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

clentafrica/research-and-data

Data sets, Jupyter notebooks, R scripts, Python scripts, analysis reports, and visualizations.

Size: 16.6 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 2

pineapple-bois/USNationalParks

An object orientated ETL pipeline that populates a PostgreSQL database with US biodiversity data

Language: Python - Size: 38.1 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

haileymeadow/MycroMaps

This project aims to provide a comprehensive set of data and tools for ecological research, biodiversity analysis, and spatial studies for Fungi and Protists.

Language: HTML - Size: 23.3 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0

b-cubed-eu/hackathon-project-7

This space is dedicated to hosting "Project 7 - Interoperable eLTER Standard Observation variables for Biosphere" as part of the B-Cubed Hackathon 2024 - Hacking Biodiversity Data Cubes for Policy.

Language: Jupyter Notebook - Size: 206 KB - Last synced at: 26 days ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1

tkristinwilson/open-data

Global open data repositories - a working list.

Size: 6.84 KB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Psilopa/paikkain

An Excel multi-cell autocomplete tool. Uses a known data file with cell rules and corresponding output to insert data into another file. Used to add verified details (like coordinates) to biodiversity obervation data, but at its core, a multipurpose tool.

Language: Python - Size: 6.42 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

arbolitoloco/Symbiota-light Fork of BioKIC/Symbiota

Forked from BioCache/Symbiota-light to implement a simplified interface for publishing monographies

Language: PHP - Size: 46.8 MB - Last synced at: 11 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

naturalsolutions/GeoNature-atlas Fork of PnX-SI/GeoNature-atlas

Application WEB permettant de générer des fiches espèces publiques à partir d'observations faune/flore

Language: HTML - Size: 39.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

omipan/camera_traps_self_supervised

This repository contains the code for reproducing the results of our ICCV 2021 paper: "Focus on the Positives: Self-Supervised Learning for Biodiversity Monitoring".

Language: Python - Size: 1.37 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 2

opendatabio/opendatabio

A system for storing and retrieving biological data - floristics, ecology and monitoring

Language: PHP - Size: 21.4 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 4

haniehsaeedi/Deep-Arctic-Diversity-Data-Analyses

This repository includes all the R scripts and the final cleaned dataset used in our in-preparation paper, The emerging picture of a diverse deep Arctic Ocean seafloor: from habitats to ecosystems. The dataset (ArcticBenthicData) includes data from our sampling, open-access data, and data derived from literature and must be cited following the MS.

Language: R - Size: 18.9 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0