GitHub topics: carpenter-lab
cytomining/pycytominer
Python package for processing image-based profiling data
Language: Python - Size: 689 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 113 - Forks: 39
broadinstitute/pooled-cell-painting-profiling-recipe
:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
Language: Python - Size: 404 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 4
broadinstitute/imaging-platform-pipelines
Cell Painting and other pipelines from the Imaging Platform
Size: 1.56 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 16 - Forks: 13
broadinstitute/pe2loaddata
Script to parse a Phenix metadata XML file and generate a .CSV for CellProfiler's loaddata module
Language: Python - Size: 71.1 MB - Last synced at: 27 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 7
broadinstitute/imaging-backup-scripts
Scripts to backup data for the Imaging Platform
Language: Shell - Size: 99.6 KB - Last synced at: 27 days ago - Pushed at: 6 months ago - Stars: 1 - Forks: 3
broadinstitute/profiling-resistance-mechanisms
Predicting pharmacodynamic responses to cancer drugs using cell morphology
Language: Jupyter Notebook - Size: 1.57 GB - Last synced at: 27 days ago - Pushed at: 7 months ago - Stars: 7 - Forks: 5
broadinstitute/pooled-cell-painting-profiling-template
:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines
Language: Python - Size: 425 KB - Last synced at: 10 months ago - Pushed at: 12 months ago - Stars: 2 - Forks: 3
broadinstitute/cmQTL
High-dimensional phenotyping to define the genetic basis of cellular morphology
Language: Jupyter Notebook - Size: 108 MB - Last synced at: 27 days ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 0
broadinstitute/cell-health
Predicting Cell Health with Morphological Profiles
Language: HTML - Size: 3.25 GB - Last synced at: 10 months ago - Pushed at: over 3 years ago - Stars: 35 - Forks: 9
CellProfiler/cellprofiler.github.com 📦
CellProfiler Website
Language: JavaScript - Size: 96.7 MB - Last synced at: 8 months ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 4
broadinstitute/imaging-bbbc
Freely Downloadable Microscopy Image Sets
Size: 55.3 MB - Last synced at: 2 months ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0
broadinstitute/cell-painting-vae
Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic
Language: Jupyter Notebook - Size: 2.75 GB - Last synced at: 27 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 2
broadinstitute/cytominer_scripts
Scripts for processing morphological profiling data using cytominer
Language: R - Size: 125 KB - Last synced at: 10 months ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 1
carpenterlab/open-science-rules
Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research
Language: HTML - Size: 772 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 5 - Forks: 2
