GitHub topics: deconvoluting-mixed-genomes
DEploid-dev/DEploid-r
An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
Language: R - Size: 625 KB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 1 - Forks: 3
DEploid-dev/DEploid
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
Language: C++ - Size: 156 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 20 - Forks: 10
gr8lawrence/ARTDeConv
Adaptive Regularized Tri-factor non-negative matrix factorization for deConvolution
Language: C++ - Size: 6.08 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
