Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: gene-modules

parashardhapola/scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Language: Python - Size: 32.6 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 90 - Forks: 12

greenelab/phenoplier

PhenoPLIER

Language: Jupyter Notebook - Size: 208 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 11 - Forks: 5

greenelab/phenoplier_manuscript

PhenoPLIER manuscript

Language: TeX - Size: 222 MB - Last synced: 3 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 2

camilababo/BIONIC

This repository contains MSc thesis results using BIONIC (developed by Duncan Forster at The University of Toronto) for the prediction of Arabidopsis's temperature-responsive gene modules.

Language: Jupyter Notebook - Size: 155 MB - Last synced: about 2 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

Related Keywords
gene-modules 4 unsupervised-learning 2 complex-traits 2 deep-learning 1 arabidopsis-thaliana 1 manuscript 1 manubot 1 twas 1 tool 1 software 1 umap 1 tsne 1 single-cell-rna-seq 1 single-cell-genomics 1 single-cell-atac-seq 1 scrna-seq 1 scatac-seq 1 scalable-data-analysis 1 pseudotime 1 multiomics 1 memory-efficient 1 graph-analytics 1 genomics 1 dimension-reduction 1 differential-expression 1 clustering 1 cite-seq 1 bioinformatics 1 big-data 1