medulla-tech/medulla

Medulla RMM is a radically simple IT automation and lifecycle management tool that offers the ability to handle repetitive tasks, quickly deploy applications, operating system and proactively manage them all where ever they are.

Language: Python - Size: 181 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 24 - Forks: 4

TheJacksonLaboratory/ezomero

A module with convenience functions for writing Python code that interacts with OMERO.

Language: Python - Size: 1.28 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 44 - Forks: 17

TheJacksonLaboratory/zarrdataset

A dataset for loading zarr files to be used in machine learning training pipelines

Language: Python - Size: 23.1 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 31 - Forks: 4

TheJacksonLaboratory/jax-omerometrics

Repo for generating OMERO reports/dashboards

Language: Python - Size: 25.4 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

romi/plant-imager

ROMI library controlling the PlantImager (hardware) or the VirtualPlantImager (Blender) to acquire images of (virtual) single potted plants.

Language: Python - Size: 16.1 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

TheJacksonLaboratory/rit-imageanalysis-containers

Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster

Language: Shell - Size: 46.9 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 3

TheJacksonLaboratory/lama_workflow

Repo with the inner workings for a container-based LAMA workflow.

Language: Shell - Size: 43 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/jax-omeroutils

A module and scripts for working with OMERO

Language: Python - Size: 186 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 6 - Forks: 3

TheJacksonLaboratory/deeplearning-image-analysis-workshop

Notebooks for the workshop Advanced Machine learning with Python

Language: CSS - Size: 21.7 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/dask_relabeling

A relabeling tool for tiled segmentation with Dask

Language: Python - Size: 1.39 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 9 - Forks: 1

TheJacksonLaboratory/omero_for_developers

material for the "OMERO for developers" workshop.

Language: Jupyter Notebook - Size: 32.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 2

TheJacksonLaboratory/images-as-signals

code and data for 'Intermediate Image Analysis - Images as Signals' workshop

Language: HTML - Size: 44.4 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

TheJacksonLaboratory/unet-glomeruli

U-Net model for glomeruli segmentation in Whole Slide Images

Language: Python - Size: 13.7 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

TheJacksonLaboratory/cnn_autoencoder

A deep learning model for histological image compression and decompression

Language: Python - Size: 827 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1

TheJacksonLaboratory/cae-codec

Convolutional Autoencoder (CAE) codec for image compression and storing in NGFF (Zarr) format.

Language: Python - Size: 56.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/Basic_skimageJAX

Tutorials for using scikit-image, written for The Jackson Laboratory

Size: 11.9 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 2

TheJacksonLaboratory/hover_net Fork of vqdang/hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

Size: 37 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/selfoverlapping

An algorithm to sub-divide polygons that self-overlap

Language: Python - Size: 91.8 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/HCS_visualization_tools

Tools to visualize HCS data stored in zarr files

Language: Jupyter Notebook - Size: 8.79 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

Viscomsoft/Scanner-Pro-SDK-ActiveX-x64

TWAIN Scanning SDK for 64 bit and 32 bit MS Access, VB.NET, C#, Delphi and Visual C++ and 32 bit Visual Basic 6 and VFP.

Language: C# - Size: 172 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1

TheJacksonLaboratory/2021-01-11-omero

Language: HTML - Size: 2.03 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/2021-03-08-scikit-image

Language: HTML - Size: 2.02 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/omero_plate_annotation

an example script to create MapAnnotations for wells in a plate based on a csv file

Language: Python - Size: 1.95 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/ezomero_demo_ome2021

Language: Jupyter Notebook - Size: 361 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

TheJacksonLaboratory/napari_omero_rois

Saving napari ROIs into OMERO

Language: Python - Size: 20.5 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 1

TheJacksonLaboratory/preprocess_histoQC

Container for preprocessing slides using HistoQC

Language: Python - Size: 13.7 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/2020-11-04-omero

Language: HTML - Size: 2.3 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/komp_omero_keys

Script for generating annotation keys for KOMP images in OMERO

Language: Python - Size: 21.5 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/detect_rois_omero

Automatically generating bounding boxes for OMERO slidescans

Language: Python - Size: 39.1 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/2021-02-16-omero

Language: HTML - Size: 2 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/2021-03-01-python-omero

Language: HTML - Size: 2.03 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/2021-05-05-fiji

Introduction to Image Analysis with Fiji

Language: HTML - Size: 2.02 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/globus-delivery

Can Globus do delivery? Let's find out!

Language: Python - Size: 8.79 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

TheJacksonLaboratory/omero-dashboard

Code for deploying a dashboard for OMERO using flask and plotly

Language: Python - Size: 8.79 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0