Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: pubmed-abstracts
PubData2XL/PubData2XL
Is a Django Python web application to download PubMed data into a Microsoft Excel spreadsheet and XML files.
Language: HTML - Size: 6.22 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 2 - Forks: 0
ncbi-nlp/bluebert
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
Language: Python - Size: 210 KB - Last synced: 19 days ago - Pushed: about 1 year ago - Stars: 538 - Forks: 76
gauravcodepro/langchain-candida-literature-miner
This prepares the candida literature for the machine learning. Although prepared for candida, it can be used for any specific term that you want to search in pubmed
Language: Python - Size: 121 KB - Last synced: 25 days ago - Pushed: about 1 month ago - Stars: 1 - Forks: 1
gauravcodepro/tair-pubmed-connector
There is no function to fetch automatically the information on the reported pubmed articles links in the tair to be used for the language models, so i coded this function which will take the tair information, a gene or locus tag and will fetch the corresponding pubmed and then from the pubmed the corresponding abstracts
Language: Python - Size: 24.4 KB - Last synced: 25 days ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0
areyasouka/curehunter-data-transform
CureHunter XSL transformer for multithreaded conversion/transformation of a directory of XML files.
Language: Java - Size: 882 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
psaegert/pmtrendviz
Unsupervised Discovery Of Trends In Biomedical Research Based On The PubMed Baseline Repository
Language: Python - Size: 500 KB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0
boudinfl/CLIREC
CLinical Information Retrieval Evaluation Collection
Language: Jupyter Notebook - Size: 522 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0
dermatologist/ckblib
Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
Language: Java - Size: 875 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 14 - Forks: 4
biomedicalinformaticsgroup/pm_abs_extr
This repository automatically requests and extracts abstract from PubMed.
Language: Python - Size: 11.7 KB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0
ANDDigest/ANDDigest_classification_models
Notebooks for fine-tuning and running of PubMedBERT-based classification models, used in the ANDDigest tool
Language: Jupyter Notebook - Size: 88.8 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 1
etetteh/bio-electra
BioMedical Language Processing with ELECTRA
Language: Python - Size: 2.64 MB - Last synced: 11 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
SannapaneniBharadwaj/PUBMED_Text_Analysis
Analyzed PubMed Text abstracts using NLP and Topic Modeling techniques
Language: Jupyter Notebook - Size: 26.3 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 4 - Forks: 2
gbnegrini/pmdatax
A command-line tool to fetch and save data from articles available on PubMed using pubmed-lookup
Language: Python - Size: 64.5 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1
it21208/PubMed-HTTP-Executors
𝐀 𝐦𝐮𝐥𝐭𝐢-𝐭𝐡𝐫𝐞𝐚𝐝𝐞𝐝 𝐉𝐚𝐯𝐚 𝐚𝐩𝐩𝐥𝐢𝐜𝐚𝐭𝐢𝐨𝐧 𝐭𝐡𝐚𝐭 𝐟𝐞𝐭𝐜𝐡𝐞𝐬 𝐏𝐮𝐛𝐌𝐞𝐝 𝐗𝐌𝐋 𝐝𝐨𝐜𝐮𝐦𝐞𝐧𝐭𝐬 𝐟𝐨𝐫 𝐚 𝐬𝐩𝐞𝐜𝐢𝐟𝐢𝐞𝐝 𝐥𝐢𝐬𝐭 𝐨𝐟 𝐏𝐌𝐈𝐃𝐬 (𝐏𝐮𝐛𝐌𝐞𝐝 𝐃𝐨𝐜𝐮𝐦𝐞𝐧𝐭 𝐈𝐝𝐞𝐧𝐭𝐢𝐟𝐢𝐞𝐫𝐬) 𝐟𝐫𝐨𝐦 𝐭𝐡𝐞 𝐧𝐜𝐛𝐢.𝐧𝐥𝐦.𝐧𝐢𝐡.𝐠𝐨𝐯 𝐰𝐞𝐛 𝐬𝐞𝐫𝐯𝐞𝐫.
Language: Java - Size: 4.38 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0
shubhpawar/Document-Clustering
Clustering PubMed Abstracts using K-Means Algorithm
Language: Jupyter Notebook - Size: 855 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 1
