Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: short-read-mapping
ksahlin/strobealign
Aligns short reads using dynamic seed size with strobemers
Language: C++ - Size: 2.45 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 125 - Forks: 16
GZHoffie/bucket-map
Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.
Language: C++ - Size: 2.77 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 4 - Forks: 0
kaist-ina/BWA-MEME
BWA-MEME: Faster BWA-MEM2 using learned-index
Language: C++ - Size: 16.8 MB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 100 - Forks: 14
mehdimerbah/BW_Seminar
This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.
Language: Python - Size: 11.1 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 1
ElsevierSoftwareX/SOFTX_2020_130 Fork of refresh-bio/Whisper
Whisper 2: indel-sensitive short read mapping. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000376
Language: C++ - Size: 2.09 MB - Last synced: over 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
