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GitLab.com / jorgeltd / ikaros-mutations-id
Pipeline for the identification of two snv of interest in the ikaros gen
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitLab.com/repositories/jorgeltd%2Fikaros-mutations-id
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language:
Dependencies:
53
Created: over 4 years ago
Updated: over 4 years ago
Last synced: 12 months ago
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Dependencies
environment.yml
conda
- _libgcc_mutex 0.1
- bcftools 1.8
- blas 1.0
- bwa 0.7.17
- bz2file 0.98
- bzip2 1.0.8
- ca-certificates 2019.10.16
- certifi 2019.9.11
- click 7.0
- coloredlogs 10.0
- curl 7.67.0
- cutadapt 1.18
- cyvcf2 0.11.5
- htslib 1.9
- humanfriendly 4.18
- intel-openmp 2019.4
- krb5 1.16.1
- libcurl 7.67.0
- libdeflate 1.2
- libedit 3.1.20181209
- libffi 3.2.1
- libgcc-ng 9.1.0
- libgfortran-ng 7.3.0
- libssh2 1.8.2
- libstdcxx-ng 9.1.0
- mkl 2019.4
- mkl-service 2.3.0
- mkl_fft 1.0.15
- mkl_random 1.1.0
- ncurses 6.1
- numpy 1.17.4
- numpy-base 1.17.4
- openjdk 8.0.152
- openssl 1.1.1d
- pandas 0.25.3
- perl 5.26.2
- pigz 2.4
- pip 19.3.1
- python 3.7.5
- python-dateutil 2.8.1
- pytz 2019.3
- readline 7.0
- samtools 1.9
- seqkit 0.11.0
- setuptools 42.0.1
- six 1.13.0
- sqlite 3.30.1
- tk 8.6.8
- varscan 2.4.4
- wheel 0.33.6
- xopen 0.7.3
- xz 5.2.4
- zlib 1.2.11