Topic: "3d-slicer"
Slicer/Slicer
Multi-platform, free open source software for visualization and image computing.
Language: C++ - Size: 122 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1,907 - Forks: 596
commontk/CTK
A set of common support code for medical imaging, surgical navigation, and related purposes.
Language: C++ - Size: 17.3 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 891 - Forks: 502
Slicer/SlicerGitSVNArchive
:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.
Language: C++ - Size: 448 MB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 872 - Forks: 458
QIICR/dcmqi
dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
Language: C++ - Size: 17.3 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 255 - Forks: 61
KitwareMedical/SlicerVirtualReality
A Slicer extension that enables user to interact with a Slicer scene using virtual reality.
Language: C++ - Size: 1.48 MB - Last synced at: about 17 hours ago - Pushed at: 7 months ago - Stars: 125 - Forks: 59
AIM-Harvard/SlicerRadiomics
A Slicer extension to provide a GUI around pyradiomics
Language: Python - Size: 955 KB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 105 - Forks: 48
NA-MIC/ProjectWeek
Website for NA-MIC Project Weeks
Language: HTML - Size: 1.07 GB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 86 - Forks: 295
SlicerDMRI/SlicerDMRI
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
Language: C++ - Size: 8.37 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 78 - Forks: 27
Slicer/SlicerNotebooks
Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python
Language: Jupyter Notebook - Size: 52.7 MB - Last synced at: 1 day ago - Pushed at: over 2 years ago - Stars: 75 - Forks: 27
Slicer/ExtensionsIndex
Slicer extensions index
Language: Python - Size: 2.08 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 73 - Forks: 252
Slicer/SlicerDocker
Build, package, test, and run 3D Slicer and Slicer Extensions in Docker.
Language: Dockerfile - Size: 751 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 60 - Forks: 31
Kitware/SlicerSALT
An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging studies. This software called Slicer Shape AnaLysis Toolbox (SlicerSALT), will enhance the intuitiveness and ease of use for such studies, as well as allow researchers to find shape changes with higher statistical power. Altogether this constitutes a crucial resource for the imaging field that will enable many and important new findings in biomedical imaging studies.
Language: Python - Size: 43.1 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 59 - Forks: 25
revarbat/mandoline-py
A 3D printing STL-to-GCode slicer based on the Clipper library.
Language: Python - Size: 1.48 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 58 - Forks: 22
KitwareMedical/SlicerCustomAppTemplate
Template to be used as a starting point for creating a custom 3D Slicer application
Language: C++ - Size: 676 KB - Last synced at: about 17 hours ago - Pushed at: 2 days ago - Stars: 56 - Forks: 26
mazurowski-lab/SlicerSegmentWithSAM
3D Slicer extension for Segment Anything Model (SAM) developed by Meta
Language: Python - Size: 664 KB - Last synced at: 5 months ago - Pushed at: 7 months ago - Stars: 46 - Forks: 6
Slicer/SlicerExecutionModel
An open-source CMake-based project that provides macros and associated tools for the easy building of 3D Slicer command line interface (CLI) modules.
Language: C++ - Size: 859 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 34 - Forks: 50
KitwareMedical/SlicerITKUltrasound
Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.
Language: C++ - Size: 870 KB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 25 - Forks: 21
DeepInfer/Slicer-DeepInfer
3D Slicer Module for connecting to model repository and use models for image analysis.
Language: Python - Size: 165 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 25 - Forks: 16
SlicerProstate/SlicerProstate
An extension to 3D Slicer to support quantitative imaging and image-guided interventions research in prostate cancer.
Language: C++ - Size: 1.41 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 20 - Forks: 9
QIICR/Slicer-PETDICOMExtension
3D Slicer extension containing tools for importing DICOM PET series
Language: C++ - Size: 274 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 18 - Forks: 12
QIICR/TCIABrowser
3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).
Language: Python - Size: 6.41 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 9
QIICR/PETTumorSegmentation
3D Slicer Extension for PETTumorSegmentation
Language: C++ - Size: 315 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 14 - Forks: 10
Slicer/vtkAddon
General-purpose features that may be integrated into VTK library in the future.
Language: C++ - Size: 165 KB - Last synced at: 17 days ago - Pushed at: 2 months ago - Stars: 13 - Forks: 22
JoostJM/SlicerCaseIterator
Simple Scripted Module to batch process patients in 3D Slicer
Language: Python - Size: 273 KB - Last synced at: 22 days ago - Pushed at: 6 months ago - Stars: 13 - Forks: 10
Auditory-Biophysics-Lab/Slicer-BoneThicknessMapping
3D Slicer module that creates a gradient map representing the bone thickness of a volume using VTK ray-casting.
Language: Python - Size: 1.5 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 13 - Forks: 8
commontk/ctk-cli
Python interface for inspecting and running CLI modules (as defined by CommonTK)
Language: Python - Size: 63.5 KB - Last synced at: 15 days ago - Pushed at: over 6 years ago - Stars: 10 - Forks: 7
KitwareMedical/trame-slicer
Bring the capabilities of 3D Slicer to the web with modern UI using the trame framework!
Language: Python - Size: 1.68 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 9 - Forks: 4
SenonETS/SlicerIGSpineDeformity
This Module is designed for spine deformity analysis using freehand 3D ultrasound imaging, and the first module Lamina Landmark Labeling help find the Spinal Cord curve in 3D, which can be projected to three anatomical planes, e.g., for Scoliosis analysis using the Cobb angle when projected to the front back view.
Language: Python - Size: 1.58 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 9 - Forks: 2
SenonETS/3DSlicerTutorial_ExtensionModuleDevelopment
SourceCode of serial tutorials on 3D Slicer extension development for beginners
Language: Python - Size: 3.62 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 2
Slicer/SlicerBuildEnvironment
A repository of scripts to set up a Slicer build environment.
Language: Dockerfile - Size: 116 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 9
MHubAI/SlicerMRunner
Beta Version. Browse and run all mhub models directly within 3D Slicer.
Language: Python - Size: 401 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 7 - Forks: 1
afids/afids-macaca Fork of greydongilmore/AFIDS_macaca
anatomical fiducials protocol adapted for macaques
Language: Jupyter Notebook - Size: 143 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 6 - Forks: 3
Slicer/DashboardScripts
Collection of scripts used to configure/build/test/package 3D Slicer and associated extensions
Language: CMake - Size: 770 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 5 - Forks: 7
girder/slicer_package_manager
REST API service and CLI built on Girder for managing Slicer application and extension packages. This site is published at slicer-packages.kitware.com and maintained by @Kitware on behalf of the 3D Slicer community.
Language: Python - Size: 2.4 MB - Last synced at: 4 days ago - Pushed at: 11 months ago - Stars: 5 - Forks: 2
KitwareMedical/SlicerMixedReality
A Slicer extension that enables user to interact with a Slicer scene using mixed reality headset.
Language: C++ - Size: 103 KB - Last synced at: about 17 hours ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0
Slicer/github-circleci-trigger 📦
:warning: OBSOLETE | A simple GitHub post-receive web hook handler able to trigger a CircleCI build.
Language: Python - Size: 17.6 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0
JRHeaton/modular-klipper-config
3D Printer Configs (Klipper/SuperSlicer)
Size: 244 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 2
QIICR/LongitudinalPETCT Fork of paulcm/LongitudinalPETCT
Longitudinal PET/CT Analysis Module for Slicer 4
Language: C++ - Size: 1.02 MB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 4
KitwareMedical/SlicerITKPython
A Slicer extension for ITK's Python wrapping.
Language: CMake - Size: 6.84 KB - Last synced at: about 17 hours ago - Pushed at: almost 8 years ago - Stars: 4 - Forks: 1
needlefinder/NeedleFinder Fork of gpernelle/NeedleFinder
NeedleFinder: fast interactive needle detection.It provides interactive tools to segment needles in MR/CT images. It has been mostly tested on MRI from gynelogical brachytherapy cases. Cf <<Validation of Catheter Segmentation for MR-Guided Gynecologic Cancer Brachytherapy.>> MICCAI 2013
Language: Python - Size: 4.38 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 3
KitwareMedical/slicer-extensions-webapp
Source code of the site allowing to browse and download Slicer extensions. This site is published at extensions.slicer.org and maintained by @Kitware on behalf of the 3D Slicer community.
Language: Vue - Size: 3.21 MB - Last synced at: about 17 hours ago - Pushed at: 11 days ago - Stars: 2 - Forks: 2
mazurowski-lab/SlicerSegmentHumanBody
3D Slicer extension for SegmentAnyBone developed by Mazurowski Lab
Language: Python - Size: 41.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 3
4Quant/LungStageAnnotator
The documentation and support for the LungStageAnnotator tool
Size: 91.8 KB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 0
Slicer/SlicerLanguageTranslations
Repository to store source and localized language translation files for 3D Slicer and its extensions
Size: 70 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 1 - Forks: 6
Slicer/apidocs.slicer.org
This project hosts and serves the Slicer API documentation
Language: Shell - Size: 431 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 1
jlulloaa/SlicerSeQ-DCEMRI
Slicer Extension to derive semi-quantitative parameters from DCE-MRI datasets
Language: Python - Size: 15.1 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 1 - Forks: 1
Slicer/preview.apidocs.slicer.org
This project hosts and serves a preview version of Slicer API documentation
Language: Shell - Size: 174 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
Zmmyslony/vector_slicer
Slicer designed for generation of planar print patterns where not only the geometry is controlled, but also the printing direction.
Language: C++ - Size: 69.2 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
QIICR/T1Mapping
T1 mapping estimates effective tissue parameter maps (T1) from multi-spectral FLASH MRI scans with different flip angles.
Language: C++ - Size: 32.2 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 2
andy9t7/SlicerAtlasEditor
This is a 3D Slicer extension for editing and simplifying The Open Anatomy Project's atlas labelmaps by anatomical groups.
Language: Python - Size: 8.91 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
Slicer/SlicerTestingData
Slicer Testing Data Mirror
Language: Python - Size: 62.5 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 8
BRAINSia/SlicerFiducials
A project to manage code for manipulating slicer ficucial
Language: Python - Size: 6.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
jcfr/pys4ext
Collection of command-line tools to manage extension sources.
Language: Python - Size: 17.6 KB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
Slicer/SlicerRegistrationLibrary
Library of registration cases including step-by-step instructions and discussions
Size: 8.79 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
Slicer/SlicerBinaryDependencies
Binary dependencies required to build Slicer
Size: 5.86 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 4
Slicer/Slicer-OpenSSL
OpenSSL sources and builds used in Slicer-based projects.
Language: CMake - Size: 17.6 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1
afids/afids-protocol-original
anatomical fiducial placement protocol
Size: 17.4 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 2
Slicer/training.slicer.org
Source files of Slicer Training Compendium
Language: Shell - Size: 2.99 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 2
QIICR/PET-IndiC
UIowa QIN PET volume indices measurement tool for 3D Slicer
Language: Python - Size: 279 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 2
Slicer/slicer-apidocs-builder
This project allows to generate and publish the Slicer API documentation
Language: Python - Size: 78.1 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 2
silverscorpio/humerus_segmentation
Semantic Segmentation using Deep Learning
Language: Python - Size: 151 MB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
QIICR/PETLiverUptakeMeasurement
3D Slicer Extension for measurement of liver uptake in PET scans
Language: C++ - Size: 142 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
Slicer/slicer-usage-stats
Source code of the site allowing to visualize Slicer application and extensions usage statistics.
Size: 6.84 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
MaruvarKuzhali/RFA-VR-Simulator
Virtual Reality Project for simulation Kidney RFA medical procedure
Size: 74.9 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
stefanomoriconi/PolarimetricTensorImaging
Generate Polarimetric Tensor Imaging (PTI) together with an Embedded DEMO for Visualisation and Interaction in 3D Slicer.
Size: 16.8 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Slicer/slicer_download
Source code of the site allowing to download preview and stable application packages. This site is published at download.slicer.org and maintained by @Kitware on behalf of the 3D Slicer community.
Language: Python - Size: 5.45 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
gsroberts1/FourDimFlow
3D Slicer Extensions for 4D Flow MRI
Language: Python - Size: 30.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
jcfr/ProjectWeekCLI
CLI for processing project week mardown-based documents.
Language: Python - Size: 11.7 KB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
abpwrs/slicerfiducials
This is a small package for 3D slicer fiducial manipulation and analysis.
Language: Python - Size: 57.6 KB - Last synced at: 23 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Salo7a/Automatic-CaScoring-From-Chest-CT
A loadable module for 3D Slicer Platform written in python, with a flask server for easy deployment on cloud computing services.
Language: Python - Size: 123 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Nobu575/3dslicer_totalsegmentator_setup
How to install TotalSegmentator into 3D Slicer (Jpn edit)
Size: 421 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Slicer/slicer_download_stats
Source code of the site allowing to visualize application packages download statistics. This site is published at download.slicer.org/download-stats and maintained by @Kitware on behalf of the 3D Slicer community.
Language: JavaScript - Size: 12.6 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
jcfr/Slicer-github-transition-scripts 📦
Tools to support transition of authoritative source repository from SVN to GitHub
Language: Python - Size: 55.7 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
Slicer/Slicer-DataStore
Slicer module to Download, Upload and Browse MRB datasets stored in a Midas database
Language: C++ - Size: 139 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 8
crad/infrastructure
This is the home for deployment scripts used to setup the Radiomics platform. This site was published at data.radiomics.io and maintained by @Kitware.
Language: Python - Size: 26.4 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
KitwareMedical/slicer-extensions-legacy-webapp
Source code of the legacy site allowing to browse and download Slicer extensions. This site is maintained by @Kitware on behalf of the 3D Slicer community.
Language: Python - Size: 44.9 KB - Last synced at: about 17 hours ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
cnell7/BrainKeychainAutomation
Contains Python and Bash automation scripts that use 3D Slicer and openSCAD to manipulate brain surface information. It then uses this information to create a brain keychain with a matching name tag. The keychains and nametags are placed in a print scene with the number of keychains in the scene being determined by the area of the print surface.
Language: Python - Size: 193 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
Slicer/SlicerDataStore
This project organizes Slicer sample data, atlases and registration case library images.
Language: Python - Size: 4.88 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
taylorhxu/Medical-Imaging
Medical Imaging Modalities
Language: Matlab - Size: 2.05 MB - Last synced at: 5 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1
ebaetscher/3DSlicer_label_proc_01
Process segmentation label maps generated in 3D slicer for Volumetrics intialy - python
Language: Python - Size: 3.91 KB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
