An open API service providing repository metadata for many open source software ecosystems.

Topic: "3d-slicer-extension"

Project-MONAI/MONAILabel

MONAI Label is an intelligent open source image labeling and learning tool.

Language: Python - Size: 53.3 MB - Last synced at: 7 days ago - Pushed at: 19 days ago - Stars: 737 - Forks: 230

QIICR/dcmqi

dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

Language: C++ - Size: 17.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 257 - Forks: 63

bowang-lab/MedSAMSlicer

3D Slicer Plugin for Segment anything in medical images

Language: Python - Size: 112 MB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 231 - Forks: 26

Slicer/SlicerJupyter

Extension for 3D Slicer that allows the application to be used from Jupyter notebook

Language: Python - Size: 1.03 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 230 - Forks: 40

SlicerHeart/SlicerHeart

3D Slicer extension for cardiac analysis

Language: Python - Size: 39.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 135 - Forks: 42

SlicerRt/SlicerRT

Open-source toolkit for radiation therapy research, an extension of 3D Slicer. Features include DICOM-RT import/export, dose volume histogram, dose accumulation, external beam planning (TPS), structure comparison and morphology, isodose line/surface generation, etc.

Language: C++ - Size: 60.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 133 - Forks: 61

KitwareMedical/SlicerVirtualReality

A Slicer extension that enables user to interact with a Slicer scene using virtual reality.

Language: C++ - Size: 1.48 MB - Last synced at: 1 day ago - Pushed at: 10 months ago - Stars: 127 - Forks: 60

DCBIA-OrthoLab/SlicerAutomatedDentalTools

A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS

Language: Python - Size: 21.3 MB - Last synced at: about 18 hours ago - Pushed at: 1 day ago - Stars: 116 - Forks: 29

gaudot/SlicerDentalSegmentator

3D Slicer extension for fully-automatic segmentation of CT and CBCT dental volumes.

Language: Python - Size: 10.8 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 111 - Forks: 16

SlicerMorph/SlicerMorph

Extension to import microCT data and conduct 3D morphometrics in Slicer

Language: Python - Size: 15.9 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 107 - Forks: 31

SlicerIGT/SlicerIGT

Modules supporting image-guided interventions in 3D Slicer.

Language: C++ - Size: 29.3 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 95 - Forks: 70

coendevente/SlicerNNInteractive

A 3D Slicer extension for efficient segmentation with nnInteractive.

Language: Python - Size: 10.3 MB - Last synced at: 3 days ago - Pushed at: 22 days ago - Stars: 85 - Forks: 9

SlicerDMRI/SlicerDMRI

Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

Language: C++ - Size: 8.37 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 78 - Forks: 27

Slicer/ExtensionsIndex

Slicer extensions index

Language: Python - Size: 2.04 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 73 - Forks: 260

rbumm/SlicerLungCTAnalyzer

This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.

Language: Python - Size: 3.28 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 70 - Forks: 22

fedesemeraro/SlicerTomoSAM

An extension of 3D Slicer using the Segment Anything Model (SAM) to aid the segmentation of 3D data from tomography or other imaging techniques.

Language: Python - Size: 9.14 MB - Last synced at: 3 days ago - Pushed at: 16 days ago - Stars: 66 - Forks: 11

mazurowski-lab/SlicerSegmentWithSAM

3D Slicer extension for Segment Anything Model (SAM) developed by Meta

Language: Python - Size: 667 KB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 63 - Forks: 7

DCBIA-OrthoLab/SlicerDentalModelSeg

This extension aims to provide a GUI for a deep-learning automated teeth segmentation tool that we developed at the University of North Carolina in Chapel Hill in collaboration with the University of Michigan in Ann Arbor.

Language: Python - Size: 24.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 56 - Forks: 14

lassoan/SlicerElastix

This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.

Language: Python - Size: 2.75 MB - Last synced at: 2 months ago - Pushed at: 6 months ago - Stars: 53 - Forks: 30

NIRALUser/SPHARM-PDM

Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.

Language: C++ - Size: 5.99 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 50 - Forks: 22

lassoan/SlicerSegmentEditorExtraEffects

Many additional segmentation tools for 3D Slicer's Segment Editor

Language: Python - Size: 2.32 MB - Last synced at: 22 days ago - Pushed at: 7 months ago - Stars: 49 - Forks: 28

R-Vessel-X/SlicerRVXLiverSegmentation

3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X

Language: Python - Size: 60.2 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 35 - Forks: 8

KitwareMedical/SlicerNNUnet

3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.

Language: Python - Size: 682 KB - Last synced at: 4 months ago - Pushed at: 6 months ago - Stars: 34 - Forks: 6

fepegar/SlicerPyTorch

This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.

Language: Python - Size: 478 KB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 34 - Forks: 5

SlicerIGT/SlicerBoneReconstructionPlanner

3D Slicer module for planning mandible reconstruction surgery using fibula flap

Language: Python - Size: 30.9 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 31 - Forks: 12

pnlbwh/ukftractography

Language: C - Size: 202 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 27 - Forks: 30

KitwareMedical/SlicerITKUltrasound

Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.

Language: C++ - Size: 870 KB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 26 - Forks: 22

QIICR/QuantitativeReporting

Segmentation-based measurements with DICOM import and export of the results.

Language: Python - Size: 31.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 25 - Forks: 25

zapaishchykova/SegmentationReview

Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created to speed up the validation process done by a clinician - the dataset loads in one batch with no need to load masks and volumes separately.

Language: Python - Size: 17.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 25 - Forks: 9

sebastianandress/Slicer-SurfaceWrapSolidify

3D Slicer extension which contains a Segment Editor Effect that solidifies and extracts the surface of a segmentation

Language: Python - Size: 32 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 25 - Forks: 6

Project-MONAI/SlicerMONAIViz

MONAIViz - 3D Slicer Extension

Language: Python - Size: 1.75 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 24 - Forks: 8

SlicerRt/SlicerDebuggingTools

Extension for 3D Slicer containing various tools for module development and debugging

Language: Python - Size: 3.74 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 24 - Forks: 7

PyTomography/SlicerSPECTRecon

A 3D Slicer extension for SPECT reconstruction, built using PyTomography

Language: Python - Size: 166 MB - Last synced at: 4 days ago - Pushed at: 4 months ago - Stars: 23 - Forks: 8

fepegar/SlicerTorchIO

3D Slicer module for TorchIO.

Language: Python - Size: 6.97 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 21 - Forks: 4

ALive-research/Slicer-Liver

3D Slicer extension for liver analysis and therapy planning

Language: C++ - Size: 49.2 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 20 - Forks: 9

Auditory-Biophysics-Lab/Slicer-ABLTemporalBoneSegmentation

3D Slicer extension featuring spacing resampling, fiducial registration, and rigid registration of temporal bone images.

Language: Python - Size: 1.1 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 19 - Forks: 2

QIICR/Slicer-PETDICOMExtension

3D Slicer extension containing tools for importing DICOM PET series

Language: C++ - Size: 274 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 18 - Forks: 12

Auditory-Biophysics-Lab/Slicer-BoneThicknessMapping

3D Slicer module that creates a gradient map representing the bone thickness of a volume using VTK ray-casting.

Language: Python - Size: 1.5 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 18 - Forks: 8

radxtools/collageradiomics

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

Language: Python - Size: 2.83 MB - Last synced at: 13 days ago - Pushed at: almost 2 years ago - Stars: 18 - Forks: 12

Slicer/SlicerSOFA

3D Slicer extension to enable simulations using the SOFA framework

Language: Python - Size: 1.28 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 17 - Forks: 8

PerkLab/SlicerFreeSurfer

This repository contains the SlicerFreeSurferImporter extension for 3D Slicer. The extension implements a module for importing models, scalar overlays, and segmentations from FreeSurfer, as well as handling the transformation of models from FreeSurfer to Slicer coordinates.

Language: C++ - Size: 2.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 17 - Forks: 5

JoostJM/SlicerCaseIterator

Simple Scripted Module to batch process patients in 3D Slicer

Language: Python - Size: 280 KB - Last synced at: 17 days ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 12

KitwareMedical/SlicerCBCTToothSegmentation

Slicer extension for automated segmentation of individual teeth in cone-beam CT dental scans using a deep-learning based approach.

Language: Python - Size: 2.22 MB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 16 - Forks: 7

HOA-2/SlicerNeuroSegmentation

NeuroSegmentation extension for 3D Slicer

Language: Python - Size: 5.49 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 2

NIRALUser/DTIPrep

DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation

Language: C++ - Size: 2.04 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 16 - Forks: 11

QIICR/TCIABrowser

3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).

Language: Python - Size: 6.41 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 15 - Forks: 9

Atracsys/SlicerAstmPhantomTest

This software is a module for 3D Slicer to perform the accuracy test of a tracking system as described in the ASTM standard F2554.

Language: Python - Size: 133 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 14 - Forks: 4

QIICR/PETTumorSegmentation

3D Slicer Extension for PETTumorSegmentation

Language: C++ - Size: 315 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 14 - Forks: 10

PerkLab/SlicerOpenAnatomy

3D Slicer extension for exporting Slicer scenes to use in the OpenAnatomy.org browser

Language: Python - Size: 11.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 14 - Forks: 6

SlicerCBM/SlicerCBM

Computational Biophysics for Medicine in 3D Slicer

Language: Python - Size: 5.28 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 2

netstim/SlicerNetstim

Collection of 3D Slicer modules mainly focused on deep brain stimulation applications.

Language: Python - Size: 14.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 15

Slicer/SlicerOpenCV

Slicer Extension wrapping OpenCV

Language: CMake - Size: 307 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 10

SlicerRt/SegmentRegistration

3D Slicer extension for segment registration (aka fusion, contour propagation)

Language: Python - Size: 1.13 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 11 - Forks: 5

SlicerProstate/mpReview

3D Slicer extension for streamlined annotation of images

Language: Python - Size: 2.99 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 16

IGSIO/SlicerIGSIO

Utility extension for 3D Slicer, containing tools and algorithms for building image guided surgery applications

Language: C++ - Size: 1.14 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 11 - Forks: 13

KitwareMedical/OsteotomyPlanner

3D Slicer extension to visualize and plan an osteotomy surgery.

Language: Python - Size: 2.9 MB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 13

Kitware/BoneTextureExtension

Slicer extensions for computing feature maps of N-Dimensional images using well-known texture analysis methods.

Language: Python - Size: 38.6 MB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 10 - Forks: 10

DCBIA-OrthoLab/CMFreg

Cranio-Maxillofacial registration

Language: Python - Size: 300 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 11

SlicerProstate/SliceTracker

SliceTracker is a 3D Slicer extension to support the workflow of MR-guided prostate biopsies.

Language: Python - Size: 28.8 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 10 - Forks: 14

kyliekeijzer/Slicer-PET-MUST-segmenter

MUltiple SUV Thresholding (MUST)-segmenter is a semi-automated PET image segmentation tool that enables delineation of multiple lesions at once, and extracts the lesions' features.

Language: Python - Size: 129 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 9 - Forks: 2

SlicerIGT/LumpNav

Slicer extension for ultrasound-guided breast tumor resection (lumpectomy)

Language: Jupyter Notebook - Size: 6.08 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 9 - Forks: 10

laboratory-for-translational-medicine/SlicerCineTrack

Module for 3D Slicer providing tracking tools and displacement visualizations

Language: Python - Size: 385 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 9 - Forks: 1

SenonETS/SlicerIGSpineDeformity

This Module is designed for spine deformity analysis using freehand 3D ultrasound imaging, and the first module Lamina Landmark Labeling help find the Spinal Cord curve in 3D, which can be projected to three anatomical planes, e.g., for Scoliosis analysis using the Cobb angle when projected to the front back view.

Language: Python - Size: 1.58 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 9 - Forks: 2

lassoan/SlicerSwissSkullStripper Fork of lorensen/SwissSkullStripperExtension

3D Slicer extension for removing the skull in MRI images using the "Swiss Skull Stripper" algorithm

Language: C++ - Size: 8.79 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 9 - Forks: 2

SlicerIGT/SlicerMarkupsToModel

3D Slicer extension to create tube or closed surface model from markup fiducials

Language: C++ - Size: 2.76 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 9 - Forks: 9

SenonETS/3DSlicerTutorial_ExtensionModuleDevelopment

SourceCode of serial tutorials on 3D Slicer extension development for beginners

Language: Python - Size: 3.62 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 2

fepegar/SlicerEPISURG

3D Slicer module to visualize the EPISURG dataset and segment postoperative brain resection cavities using deep learning.

Language: Python - Size: 1.41 MB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 1

chir-set/SlicerExtraMarkups

Custom markups for Slicer

Language: C++ - Size: 2.78 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 8 - Forks: 4

Slicer/SlicerLanguagePacks

3D Slicer extension for creating, editing, and storing translations for Slicer core and extensions

Language: Python - Size: 16.5 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 8 - Forks: 11

DCBIA-OrthoLab/ShapeVariationAnalyzer

Shape modeling and classification, extract shape features

Language: Python - Size: 27.5 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 22

NIRALUser/DTIProcessToolkit

DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah

Language: C++ - Size: 175 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 8

DCBIA-OrthoLab/SlicerCMF

SlicerCMF is the dissemination vehicle of powerful dental image analysis methodology based on 3D Slicer open-source software. SlicerCMF supports patient-specific decision making and assessment of the disease progression via registration of serial images. http://cmf.slicer.org/

Language: HTML - Size: 76.2 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 8 - Forks: 1

SlicerUltrasound/SlicerUltrasound

Modules for 3D Slicer

Language: Python - Size: 41.7 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 7 - Forks: 13

SlicerIGT/SlicerSoundControl

3D Slicer extension to generate sound for feedback during navigation

Language: Python - Size: 943 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 2

JBeninca/SlicerStereotaxia

Slicer stereotatic frame 3D coordinates calculus.-

Language: Python - Size: 29.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 7 - Forks: 6

Slicer/SlicerDeveloperToolsForExtensions

Set of tools to help developers when creating new Slicer extensions

Language: Python - Size: 170 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 7

CSIM-Toolkits/Slicer-LesionSimulatorExtension

3D Slicer extension that provides a toolkit for Multiple Sclerosis lesion simulation in multimodal MRI images, such as T1, T2, T2-FLAIR and DTI scalar maps.

Language: C++ - Size: 21.3 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 7 - Forks: 2

MHubAI/SlicerMRunner

Beta Version. Browse and run all mhub models directly within 3D Slicer.

Language: Python - Size: 401 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 1

sowwnn/Brain-Tumor-Segmentaion-on-3D-Slicer

An Extension in 3D Slicer for Brain Tumor Segmentation.

Language: Python - Size: 18.1 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 0

QIICR/SlicerDevelopmentToolbox

API for 3D Slicer extension development providing widgets, mixins, helpers, decorators etc.

Language: Python - Size: 1.98 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 7

SlicerRt/FilmDosimetryAnalysis

3D Slicer extension containing a slicelet called Film Dosimetry Analysis. It is a 2D dosimetry tool used in commissioning new radiation techniques and to validate the accuracy of radiation treatment by enabling visual comparison of the planned dose to the delivered dose

Language: Python - Size: 5.07 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 5

KitwareMedical/SlicerIMSTK

Extension for 3D slicer that enables user to prototype real-time multi-modal surgical simulation scenarios by leveraging iMSTK

Language: CMake - Size: 368 KB - Last synced at: 1 day ago - Pushed at: almost 3 years ago - Stars: 7 - Forks: 5

SlicerRt/Sequences 📦

Repository to host Sequences (formerly MultidimData) extension

Language: C++ - Size: 3.02 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 17

Slicer/SlicerSurfaceToolbox

Supports various cleanup and optimization processes on surface models

Language: C++ - Size: 612 KB - Last synced at: 16 days ago - Pushed at: 17 days ago - Stars: 6 - Forks: 17

ImagingDataCommons/SlicerIDCBrowser

A 3D Slicer extension to support access to the content of NCI Imaging Data Commons

Language: Python - Size: 1.08 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 6 - Forks: 6

SlicerHeart/SlicerSurfaceMarkup

Extension to test the new grid surface markup with

Language: C++ - Size: 1.31 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 6 - Forks: 4

netstim/SlicerANTs

This extension implements ANTs Registration into Slicer

Language: Python - Size: 1.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 6

Slicer/LandmarkRegistration

An interactive registration tool that manages viewing and manipulating of sets of fiducials

Language: Python - Size: 597 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 25

pnlbwh/SlicerDiffusionQC

Quality checking of DWMRI

Language: Python - Size: 72 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 5

naterex23/SlicerAblationPlanner

Ablation Planner

Language: Python - Size: 53 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 2

gaoyi/SlicerBigImage

Large (GB and above) scale microscopic image computing using 3D Slicer

Language: C++ - Size: 12.7 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 5

opendose/opendose3d

This project implements a Slicer3D module aiming for molecular radiotherapy dosimetry

Last synced at: about 2 years ago - Stars: 6 - Forks: 2

jmhuie/SlicerBiomech

Extension for the collection and analysis of biomechanical data from 3D specimen data

Language: Python - Size: 96.9 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 5 - Forks: 2

BrownBiomechanics/SlicerAutoscoperM

This 3D Slicer extension enables users to perform image registration.

Language: Python - Size: 2.31 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 4

KitwareMedical/SlicerSkeletalRepresentation

Collection of Skeletal Model Extensions for 3D Slicer/SlicerSALT

Language: Python - Size: 16.7 MB - Last synced at: 1 day ago - Pushed at: 3 months ago - Stars: 5 - Forks: 11

SlicerMorph/SlicerMEMOS

Mouse Embryo Multi-Organ Segmentations

Language: Python - Size: 1.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 5 - Forks: 3

LOAMRI/Slicer-DTI-ALPS

Slicer Module to calculate the diffusion tensor image analysis along the perivascular space (DTI-ALPS)

Language: Python - Size: 1.24 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 5 - Forks: 2

cpinter/SlicerSegmentationVerification

Tools for verifying the result of AI segmentation.

Language: Python - Size: 1.87 MB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 5 - Forks: 1

NIRALUser/MeshToLabelMap

Language: C++ - Size: 90.8 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 7

KitwareMedical/SlicerPipelines

Pipelines are an extension for 3DSlicer that will offer the ability to create simple modules (aka pipelines) via a GUI interface with no coding knowledge needed.

Language: Python - Size: 1.02 MB - Last synced at: 1 day ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 7

Related Topics
3d-slicer 26 python 11 segmentation 10 diffusion-mri 10 medical-imaging 10 slicercmf 9 neuroimaging 8 magnetic-resonance-imaging 7 medical-image-computing 7 vtk 6 kitware 6 deep-learning 6 itk 5 nci-qin 5 3d-models 5 brain 5 tractography 4 registration 4 image-processing 4 nci-itcr 3 dicom 3 pytorch 3 landmark-localization 3 ultrasound-imaging 3 medical-image-processing 3 monai 3 machine-learning 3 segment-anything-model 3 slicer 3 shape-analysis 3 landmark-recognition 2 slicer-deep-learner 2 surface-learner 2 ui 2 dmri 2 mixed-reality 2 mri 2 mri-images 2 brain-segmentation 2 python3 2 shape 2 nnunet 2 t1-weighted-mri 2 t2-flair-mri 2 dti 2 medical-image-segmentation 2 educational 2 landmark-detection 2 visualization 2 ai 2 spine 2 spharm 2 neuroimaging-analysis 2 cancer-imaging-research 2 morphometry 2 morphometrics 2 hippocampus 2 bash 2 qt5-gui 2 cmake 2 quantitative-imaging 2 tcia-dac 2 classification 2 3d 2 qt5 2 geometry-image 1 theos 1 surface-classification 1 mass-spectrometry-imaging 1 3d-images 1 itcr 1 feature-extraction 1 orthodontics 1 nciitcr 1 digital-image-processing 1 mesh-generation 1 meshfree 1 meshless 1 mfem 1 scientific-computing 1 brain-tumor-segmentation 1 3d-slicer-custom-application 1 mp2rage 1 covid 1 covid-19 1 covid-volumetry 1 radiomics-features 1 radiomics-feature-extraction 1 ct-volumetry 1 lung-ct 1 lung-disease 1 lung-lobes 1 lung-segmentation 1 convolutional-neural-networks 1 radiomics 1 keras-tensorflow 1 dental 1 arfi 1 insight-toolkit 1 nih 1