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Topic: "approximate-bayesian-computation"

florent-leclercq/Bayes_InfoTheory

Lectures on Bayesian statistics and information theory

Language: Jupyter Notebook - Size: 47.4 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 31 - Forks: 4

dirmeier/sbijax

Simulation-based inference in JAX

Language: Python - Size: 25.4 MB - Last synced at: about 17 hours ago - Pushed at: about 2 months ago - Stars: 31 - Forks: 4

francescoalemanno/KissABC.jl

Pure julia implementation of Multiple Affine Invariant Sampling for efficient Approximate Bayesian Computation

Language: Julia - Size: 2.98 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 29 - Forks: 8

Plant-Food-Research-Open/calisim

A toolbox for the calibration and evaluation of simulation models.

Language: Python - Size: 7.32 MB - Last synced at: 21 days ago - Pushed at: 22 days ago - Stars: 14 - Forks: 2

neuralyzer/pyabc

pyABC: distributed, likelihood-free inference

Size: 25.8 MB - Last synced at: 24 days ago - Pushed at: over 7 years ago - Stars: 13 - Forks: 3

Quetzal-framework/quetzal-CoaTL

A toolbox for C++ devs wanting to build geospatial population genetics simulators !

Language: C++ - Size: 51.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 1

mauricelanghinrichs/ABCdeZ.jl

Approximate Bayesian Computation (ABC) with differential evolution (de) moves and model evidence (Z) estimates.

Language: Julia - Size: 894 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 12 - Forks: 1

JBris/model-calibration-evaluation

Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference

Language: Python - Size: 4.18 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 11 - Forks: 1

compops/gpo-smc-abc

Bayesian optimisation for fast approximate inference in state-space models with intractable likelihoods

Language: Python - Size: 11.7 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 11 - Forks: 6

florent-leclercq/pyselfi

Simulator Expansion for Likelihood-Free Inference (SELFI): a python implementation

Language: Jupyter Notebook - Size: 44.7 MB - Last synced at: 25 days ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 1

epistorm/epydemix

epydemix, the ABC of epidemics

Language: Jupyter Notebook - Size: 16 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 1

diyabc/abcranger

ABC random forests for model choice and parameter estimation, pure C++ implementation

Language: Jupyter Notebook - Size: 38.9 MB - Last synced at: 29 days ago - Pushed at: 8 months ago - Stars: 9 - Forks: 4

NisanurBulut/MatlabImageProcessing

Adding Noise Noise Canceling Image resizing Resolution Study Filtering processes -Midic filter -Mean filter -Laplasian filter Photo Sharpening

Language: MATLAB - Size: 20.5 KB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 1

americocunhajr/CE-ABC

CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.

Language: MATLAB - Size: 68.1 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 7 - Forks: 1

ocramz/bayesian-inference

Language: Haskell - Size: 113 KB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 7 - Forks: 1

JuliaApproxInference/LikelihoodfreeInference.jl

Likelihood-Free Inference for Julia.

Language: Julia - Size: 11.2 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 0

szrlee/HyperAgent

The official code repo for HyperAgent algorithm published in ICML 2024.

Language: Python - Size: 1.07 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 4 - Forks: 0

florent-leclercq/correlations_vs_field

Correlation functions versus field-level inference in cosmology: example with log-normal fields

Language: Jupyter Notebook - Size: 130 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0

diyabc/diyabcGUI

User interface to DIYABC/AbcRanger

Language: R - Size: 62.9 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 2

florent-leclercq/lotkavolterra_simulator

Simulator of the Lotka-Volterra prey-predator system with demographic and observational noise and biases

Language: Jupyter Notebook - Size: 1.37 MB - Last synced at: 1 day ago - Pushed at: 2 months ago - Stars: 3 - Forks: 0

JBris/deep-root-gen

A simulation model for the digital reconstruction of 3D root system architectures. Integrated with a simulation-based inference generative deep learning model.

Language: Python - Size: 4.71 MB - Last synced at: 2 months ago - Pushed at: 7 months ago - Stars: 3 - Forks: 1

QuanticPony/Analysis-of-effectiveness-of-lockdown-policies-for-desease-containment

Trabajo de Fin de Grado de Física 2022

Language: Python - Size: 15.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

Eawag-SIAM/SimulatedAnnealingABC.jl

Approximate Bayesian Computation algorithm based on simulated annealing

Language: Julia - Size: 3.52 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

ngozzi/epydemix

epydemix, the ABC of epidemics

Language: Jupyter Notebook - Size: 211 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

dirmeier/ssnl

Simulation-based inference using SSNL

Language: Python - Size: 57.6 KB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

SourabhKul/ABC-COVID-19-GPU-TPU

GPU and TPU implementation of parallelized ABC inference for a stochastic epidemiology model for COVID-19

Language: Jupyter Notebook - Size: 26.4 KB - Last synced at: 11 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

ocbe-uio/elfi Fork of elfi-dev/elfi

A Python package for likelihood-free inference (LFI) methods such as Approximate Bayesian Computation (ABC)

Language: Python - Size: 1.27 MB - Last synced at: 9 months ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

alex-schaaf/abc-geomodeling

Figuring out how Approximate Bayesian Computation works and how it can be applied to geological modeling.

Language: Jupyter Notebook - Size: 352 KB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0

SamuelWiqvist/ApproximateBayesianComputation.jl

Julia implementation of some ABC algorithms.

Language: Julia - Size: 1.33 MB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 0

JBris/likelihood_free_hyperpriors_test

Testing out hyper-priors for likelihood-free methods

Language: Jupyter Notebook - Size: 354 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

akpanitorobong/7089CEM-Statistical_Methods_For_Data_Science

CW Code and Dataset for SMDS module at Coventry University. Applied Nonlinear Regression and Bayesian Inference techniques to analyze MEG brain responses from a simulated neuromarketing experiment. The project demonstrates proficiency in modeling complex biological signals and estimating parameter uncertainty using Approximate Bayesian Computation

Language: Jupyter Notebook - Size: 2.14 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

jaspervrugt/ABC-PMC

Approximation Bayesian Computation: Population Monte Carlo in MATLAB and Python

Language: Python - Size: 327 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

mqcase1004/Tukey-Depth-ABC

Efficient Estimation of Generative Models using Tukey Depth

Language: R - Size: 73.2 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

JuliaEpi/MathepiaInference.jl

Bayesian inference tools. Including state-of-the-art inference methods: HMC family, ABC family, Data assimilation, and so on. Part of Mathepia.jl

Language: Julia - Size: 96.7 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

diyabc/MER_publication_materials

Publication Materials for "Extending Approximate Bayesian Computation with Supervised Machine Learning to Infer Demographic History from Genetic Polymorphisms Using DIYABC Random Forest" in *Molecular Ecology Resources* special issue

Size: 58.8 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

alex-schaaf/ABCsampler

Simple model class and non-vectorized samplers for Approximate Bayesian Statistics (ABC)

Language: Python - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

isaacovercast/gimmeSAD

Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.

Language: Jupyter Notebook - Size: 37.5 MB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

tillahoffmann/summaries2

Language: Python - Size: 171 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

jaspervrugt/DREAM-Suite

DiffeRential Evolution Adaptive Metropolis algorithm: MATLAB and Python Toolbox

Language: MATLAB - Size: 27.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

AstraBert/diyabc-support-tutorial

DIYABC support tutorial from my experience

Size: 592 KB - Last synced at: 6 days ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

zephyralistair/ABC-for-Voxelwise-Kinetic-Modeling

This repo contains code that implements vPET-ABC. Currently, we have included Python code attempting GPU acceleration on FDG compartment models.

Language: Python - Size: 744 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

nifleisch/approximate-bayesian-computation

Application of rejection sampling and markov chain monte carlo (MCMC) algorithms to approximate bayesian computation (ABC). The project includes application of ABC to model the pharmacokinetics of theophylline.

Language: Python - Size: 3.06 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Adolphus8/Approximate_Bayesian_Computation

Repository on Approximate Bayesian Computation and the different distance metrics which can be implemented.

Language: MATLAB - Size: 10.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

tillahoffmann/summaries

Comparison of summary statistic selection methods with a unifying perspective.

Language: Python - Size: 229 KB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

sparklyworm/4YP

4th Year Project - Optimal Control of Directed Evolution

Language: MATLAB - Size: 9.02 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

bgautijonsson/bggjphd

An R package to go along with my PhD research

Language: R - Size: 195 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

AnthonyEbert/protoABC

R-package protoABC: Flexible approach to Approximate Bayesian Computation (ABC)

Language: R - Size: 64.5 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

Serock3/TIF345-Advanced-simulation-and-machine-learning

Repo for projects in the Chalmers course "TIF345 / FYM345 Advanced simulation and machine learning" 2020. Authors: Sebastian Holmin and Erik Andersson

Language: Jupyter Notebook - Size: 8.82 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

tomshafer/bcf

Simulate N-player competitions via Approximate Bayesian Computation

Language: R - Size: 15.6 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

Related Topics
likelihood-free-inference 13 bayesian-inference 12 simulation-based-inference 10 abc 6 bayesian-statistics 6 bayesian-optimization 4 python 4 population-genetics 4 machine-learning 4 normalizing-flows 3 computational-epidemiology 3 bayesian-data-analysis 3 parameter-estimation 3 statistical-inference 3 sequential-monte-carlo 3 approximate-inference 3 deep-learning 3 markov-chain-monte-carlo 3 summary-metrics 2 julia-language 2 bayesian-methods 2 posterior-sampling 2 sensitivity-analysis 2 generative-neural-network 2 approximate-bayesian-inference 2 likelihood-free 2 surrogate-models 2 random-forest 2 model-choice 2 data-assimilation 2 uncertainty-analysis 2 statistics 2 pymc 2 optuna 2 epidemiology 2 simulation 2 epidemics 2 epidemic-simulations 2 covid-19 2 information-theory 2 cosmology 2 summary-statistics 2 dash-app 1 dash-plotly 1 normalising-flows 1 root-system 1 root-system-architecture 1 simulation-modeling 1 julia 1 marginal-likelihood 1 model-evidence 1 model-selection 1 monte-carlo-methods 1 posterior-probability 1 alpha-stable-processes 1 matlob 1 mean-filter 1 saltandpepper 1 kissabc 1 probabilistic-inference 1 jax 1 elfi 1 hyperprior 1 multi-level-modeling 1 pyabc 1 estimate-parameters 1 abundance 1 community-ecology 1 community-genetic-diversity 1 species-abundance-distributions 1 3d-modelling 1 3d-models 1 crop-model 1 crop-modeling 1 history-matching 1 model-calibration 1 optimal-experimental-design 1 optimisation 1 reliability-analysis 1 sbi 1 surrogate-based-optimization 1 uncertainty-quantification 1 data-science 1 meg-data-analysis 1 neuromarketing 1 nonlinear-regression 1 r-programming-language 1 statistical-modeling 1 binary-channel 1 data-analysis 1 deblending 1 decision-theory 1 denoising 1 lecture-material 1 maxent 1 inference 1 machine-learning-library 1 statistical-learning 1 galaxy-clustering 1 large-scale-structure 1