Topic: "approximate-bayesian-computation"
florent-leclercq/Bayes_InfoTheory
Lectures on Bayesian statistics and information theory
Language: Jupyter Notebook - Size: 47.4 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 31 - Forks: 4

dirmeier/sbijax
Simulation-based inference in JAX
Language: Python - Size: 25.4 MB - Last synced at: about 17 hours ago - Pushed at: about 2 months ago - Stars: 31 - Forks: 4

francescoalemanno/KissABC.jl
Pure julia implementation of Multiple Affine Invariant Sampling for efficient Approximate Bayesian Computation
Language: Julia - Size: 2.98 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 29 - Forks: 8

Plant-Food-Research-Open/calisim
A toolbox for the calibration and evaluation of simulation models.
Language: Python - Size: 7.32 MB - Last synced at: 21 days ago - Pushed at: 22 days ago - Stars: 14 - Forks: 2

neuralyzer/pyabc
pyABC: distributed, likelihood-free inference
Size: 25.8 MB - Last synced at: 24 days ago - Pushed at: over 7 years ago - Stars: 13 - Forks: 3

Quetzal-framework/quetzal-CoaTL
A toolbox for C++ devs wanting to build geospatial population genetics simulators !
Language: C++ - Size: 51.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 1

mauricelanghinrichs/ABCdeZ.jl
Approximate Bayesian Computation (ABC) with differential evolution (de) moves and model evidence (Z) estimates.
Language: Julia - Size: 894 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 12 - Forks: 1

JBris/model-calibration-evaluation
Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference
Language: Python - Size: 4.18 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 11 - Forks: 1

compops/gpo-smc-abc
Bayesian optimisation for fast approximate inference in state-space models with intractable likelihoods
Language: Python - Size: 11.7 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 11 - Forks: 6

florent-leclercq/pyselfi
Simulator Expansion for Likelihood-Free Inference (SELFI): a python implementation
Language: Jupyter Notebook - Size: 44.7 MB - Last synced at: 25 days ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 1

epistorm/epydemix
epydemix, the ABC of epidemics
Language: Jupyter Notebook - Size: 16 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 1

diyabc/abcranger
ABC random forests for model choice and parameter estimation, pure C++ implementation
Language: Jupyter Notebook - Size: 38.9 MB - Last synced at: 29 days ago - Pushed at: 8 months ago - Stars: 9 - Forks: 4

NisanurBulut/MatlabImageProcessing
Adding Noise Noise Canceling Image resizing Resolution Study Filtering processes -Midic filter -Mean filter -Laplasian filter Photo Sharpening
Language: MATLAB - Size: 20.5 KB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 1

americocunhajr/CE-ABC
CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.
Language: MATLAB - Size: 68.1 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 7 - Forks: 1

ocramz/bayesian-inference
Language: Haskell - Size: 113 KB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 7 - Forks: 1

JuliaApproxInference/LikelihoodfreeInference.jl
Likelihood-Free Inference for Julia.
Language: Julia - Size: 11.2 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 0

szrlee/HyperAgent
The official code repo for HyperAgent algorithm published in ICML 2024.
Language: Python - Size: 1.07 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 4 - Forks: 0

florent-leclercq/correlations_vs_field
Correlation functions versus field-level inference in cosmology: example with log-normal fields
Language: Jupyter Notebook - Size: 130 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0

diyabc/diyabcGUI
User interface to DIYABC/AbcRanger
Language: R - Size: 62.9 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 2

florent-leclercq/lotkavolterra_simulator
Simulator of the Lotka-Volterra prey-predator system with demographic and observational noise and biases
Language: Jupyter Notebook - Size: 1.37 MB - Last synced at: 1 day ago - Pushed at: 2 months ago - Stars: 3 - Forks: 0

JBris/deep-root-gen
A simulation model for the digital reconstruction of 3D root system architectures. Integrated with a simulation-based inference generative deep learning model.
Language: Python - Size: 4.71 MB - Last synced at: 2 months ago - Pushed at: 7 months ago - Stars: 3 - Forks: 1

QuanticPony/Analysis-of-effectiveness-of-lockdown-policies-for-desease-containment
Trabajo de Fin de Grado de Física 2022
Language: Python - Size: 15.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

Eawag-SIAM/SimulatedAnnealingABC.jl
Approximate Bayesian Computation algorithm based on simulated annealing
Language: Julia - Size: 3.52 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

ngozzi/epydemix
epydemix, the ABC of epidemics
Language: Jupyter Notebook - Size: 211 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

dirmeier/ssnl
Simulation-based inference using SSNL
Language: Python - Size: 57.6 KB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

SourabhKul/ABC-COVID-19-GPU-TPU
GPU and TPU implementation of parallelized ABC inference for a stochastic epidemiology model for COVID-19
Language: Jupyter Notebook - Size: 26.4 KB - Last synced at: 11 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

ocbe-uio/elfi Fork of elfi-dev/elfi
A Python package for likelihood-free inference (LFI) methods such as Approximate Bayesian Computation (ABC)
Language: Python - Size: 1.27 MB - Last synced at: 9 months ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

alex-schaaf/abc-geomodeling
Figuring out how Approximate Bayesian Computation works and how it can be applied to geological modeling.
Language: Jupyter Notebook - Size: 352 KB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0

SamuelWiqvist/ApproximateBayesianComputation.jl
Julia implementation of some ABC algorithms.
Language: Julia - Size: 1.33 MB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 0

JBris/likelihood_free_hyperpriors_test
Testing out hyper-priors for likelihood-free methods
Language: Jupyter Notebook - Size: 354 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

akpanitorobong/7089CEM-Statistical_Methods_For_Data_Science
CW Code and Dataset for SMDS module at Coventry University. Applied Nonlinear Regression and Bayesian Inference techniques to analyze MEG brain responses from a simulated neuromarketing experiment. The project demonstrates proficiency in modeling complex biological signals and estimating parameter uncertainty using Approximate Bayesian Computation
Language: Jupyter Notebook - Size: 2.14 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

jaspervrugt/ABC-PMC
Approximation Bayesian Computation: Population Monte Carlo in MATLAB and Python
Language: Python - Size: 327 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

mqcase1004/Tukey-Depth-ABC
Efficient Estimation of Generative Models using Tukey Depth
Language: R - Size: 73.2 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

JuliaEpi/MathepiaInference.jl
Bayesian inference tools. Including state-of-the-art inference methods: HMC family, ABC family, Data assimilation, and so on. Part of Mathepia.jl
Language: Julia - Size: 96.7 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

diyabc/MER_publication_materials
Publication Materials for "Extending Approximate Bayesian Computation with Supervised Machine Learning to Infer Demographic History from Genetic Polymorphisms Using DIYABC Random Forest" in *Molecular Ecology Resources* special issue
Size: 58.8 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

alex-schaaf/ABCsampler
Simple model class and non-vectorized samplers for Approximate Bayesian Statistics (ABC)
Language: Python - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

isaacovercast/gimmeSAD
Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.
Language: Jupyter Notebook - Size: 37.5 MB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

tillahoffmann/summaries2
Language: Python - Size: 171 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

jaspervrugt/DREAM-Suite
DiffeRential Evolution Adaptive Metropolis algorithm: MATLAB and Python Toolbox
Language: MATLAB - Size: 27.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

AstraBert/diyabc-support-tutorial
DIYABC support tutorial from my experience
Size: 592 KB - Last synced at: 6 days ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

zephyralistair/ABC-for-Voxelwise-Kinetic-Modeling
This repo contains code that implements vPET-ABC. Currently, we have included Python code attempting GPU acceleration on FDG compartment models.
Language: Python - Size: 744 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

nifleisch/approximate-bayesian-computation
Application of rejection sampling and markov chain monte carlo (MCMC) algorithms to approximate bayesian computation (ABC). The project includes application of ABC to model the pharmacokinetics of theophylline.
Language: Python - Size: 3.06 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Adolphus8/Approximate_Bayesian_Computation
Repository on Approximate Bayesian Computation and the different distance metrics which can be implemented.
Language: MATLAB - Size: 10.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

tillahoffmann/summaries
Comparison of summary statistic selection methods with a unifying perspective.
Language: Python - Size: 229 KB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

sparklyworm/4YP
4th Year Project - Optimal Control of Directed Evolution
Language: MATLAB - Size: 9.02 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

bgautijonsson/bggjphd
An R package to go along with my PhD research
Language: R - Size: 195 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

AnthonyEbert/protoABC
R-package protoABC: Flexible approach to Approximate Bayesian Computation (ABC)
Language: R - Size: 64.5 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

Serock3/TIF345-Advanced-simulation-and-machine-learning
Repo for projects in the Chalmers course "TIF345 / FYM345 Advanced simulation and machine learning" 2020. Authors: Sebastian Holmin and Erik Andersson
Language: Jupyter Notebook - Size: 8.82 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

tomshafer/bcf
Simulate N-player competitions via Approximate Bayesian Computation
Language: R - Size: 15.6 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
