Topic: "beast2"
ropensci/babette
babette is an R package to work with BEAST2
Language: R - Size: 10.2 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 45 - Forks: 6
LinguaPhylo/linguaPhylo
LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models
Language: Java - Size: 127 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 22 - Forks: 8
Wytamma/beastiary
Real time and remote MCMC trace monitoring with BEASTIARY.
Language: Vue - Size: 54.3 MB - Last synced at: 5 days ago - Pushed at: 22 days ago - Stars: 20 - Forks: 2
ropensci/beautier
R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
Language: R - Size: 11.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 13 - Forks: 2
ropensci/beastier
R package to run BEAST2
Language: R - Size: 4.44 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 11 - Forks: 1
CompEvol/CBAN
releases of beast2 packaged zip files in a reliable location
Language: JavaScript - Size: 729 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 7 - Forks: 20
CompEvol/sampled-ancestors
This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors
Language: Java - Size: 4.47 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 7 - Forks: 12
CompEvol/morph-models
Models for dealing with morphological data
Language: Java - Size: 170 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 11
BEAST2-Dev/BEASTLabs
A package for BEAST 2 implementing generally useful stuff
Language: Java - Size: 18.1 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 6 - Forks: 5
andersgs/beast2_constsites 📦
Update your BEAST2 XML to account for constant sites
Language: Python - Size: 41 KB - Last synced at: 21 days ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 1
BEAST2-Dev/phylodynamics
Bayesian phylodynamic methods in BEAST2
Language: Java - Size: 651 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2
richelbilderbeek/pirouette
R package that estimates the error BEAST2 makes from a given phylogeny
Language: R - Size: 8.75 MB - Last synced at: about 2 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 2
CompEvol/beast2-site
beast2 web development site
Language: HTML - Size: 33.3 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 2 - Forks: 7
4ment/flc
Local clock model using relaxed and strict clocks
Language: Java - Size: 1.28 MB - Last synced at: about 2 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 3
BEAST2-Dev/bdsky
Birth Death Serial Skyline Model for BEAST2
Language: Java - Size: 25.8 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 12
Wytamma/dynamic-beast
Dynamic BEAST2 XML files
Language: Python - Size: 186 KB - Last synced at: 12 days ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0
j3551ca/BEAST-FLOW
Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.
Language: Nextflow - Size: 314 KB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 1
theLongLab/TransCOVID
A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.
Language: R - Size: 5.81 MB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
BEAST2-Dev/beast-classic
Automatically exported from code.google.com/p/beast-classic
Language: Java - Size: 10.5 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 4
JBris/beast2-experiments
Experiments with the BEAST 2 software
Language: Python - Size: 34.9 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
JBris/beast2-docker
Docker and Apptainer setup for the BEAST 2 software
Language: R - Size: 679 KB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
BEAST2-Dev/codonsubstmodels
Codon substitution models for DNA
Language: Java - Size: 8.49 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
laduplessis/Treponema_pallidum_in_early_modern_Europe
Data and scripts to reproduce the molecular clock dating analyses presented in "Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in early modern Europe (Majander et al.)
Language: Python - Size: 48.1 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
laduplessis/beast2_bdskysa_ebov_example
Example for BEAST v2.5 paper
Language: Python - Size: 41.8 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2
Wytamma/pybeast
Language: Python - Size: 201 KB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
Rohit-Rannavre/Phylogenetic-Trees
This repository contains some phylogenetic trees I have done for practical purposes.
Size: 1.22 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
BEAST2-Dev/model-selection
Automatically exported from code.google.com/p/model-selection
Language: Java - Size: 370 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 3
Hanqing1989/Github_Bioinformatics_Learning
不定期更新在学习生物信息学过程中所用的编程语言、包和软件的教程和案例，欢迎有兴趣的伙伴一起交流学习。
Language: HTML - Size: 213 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
walterxie/beast2stats
Basic statistics of BEAST2 development
Language: HTML - Size: 2.52 MB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
santiagosnchez/STRlength2repeat
Python code to convert STR length data to number of repetitions
Language: Python - Size: 19.5 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
4ment/bwest
Modules for BEAST 2
Language: Java - Size: 35.2 KB - Last synced at: 15 days ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
walterxie/PackageViewer
Summarise BEAST 2 packages
Language: JavaScript - Size: 301 KB - Last synced at: 2 months ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
walterxie/CitationManager
Analyse citations from locally installed BEAST 2 packages
Language: Java - Size: 9.77 KB - Last synced at: 2 months ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
walterxie/startingtree
nice algorithm to initialize starting trees in BEAST2
Language: Java - Size: 85.9 KB - Last synced at: 2 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
4ment/flc-data
Language: Python - Size: 19.5 KB - Last synced at: 15 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
hisplan/docker-BEASTvntr
Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites
Language: Shell - Size: 4.88 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
