compartmental-models | Topic | Ecosyste.ms: Repos

Topic: "compartmental-models"

ECheynet/SEIR

Generalized SEIR Epidemic Model (fitting and computation)

Language: MATLAB - Size: 122 MB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 89 - Forks: 44

silpara/simulators

Simulators for Compartmental Models in Epidemiology

Language: Jupyter Notebook - Size: 640 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 32 - Forks: 38

epispot/epispot

A tool for modeling infectious diseases.

Language: Python - Size: 6 MB - Last synced at: about 14 hours ago - Pushed at: about 1 year ago - Stars: 17 - Forks: 5

ADicksonLab/OpenRXN

A free, open-source tool for modeling chemical reaction networks in Python

Language: Python - Size: 46.9 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 2

stur86/compyrtment

A simple Python library for compartment models

Language: Jupyter Notebook - Size: 984 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 1

HopkinsIDD/flepiMoP

The Flexible Epidemic Modeling Pipeline

Language: HTML - Size: 144 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 9 - Forks: 4

T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife 2017; 6:e26517

Language: MATLAB - Size: 20.2 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 8 - Forks: 3

americocunhajr/CE-ABC

CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.

Language: MATLAB - Size: 68.1 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 1

open-sir/open-sir

Python SIR-x model implementation

Language: Python - Size: 1.03 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 8

mbkoltai/RSV-resurgence-model

Code for modeling RSV resurgence following contact restrictions

Language: R - Size: 451 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 0

canmod/macpan2

Rebuilding https://github.com/mac-theobio/McMasterPandemic/

Language: R - Size: 59.8 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 4 - Forks: 2

nicoloverardo/master-degree-thesis

Master thesis for the MSc in Data Science and Economics at Università degli Studi di Milano

Language: Jupyter Notebook - Size: 100 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

marialonsogar/COVID-Dynamics-Model-Comparison

Comparative study of the main techniques used for COVID modeling where the information available is infected curve. The objective is to identify those univariate techniques that produce the best results, analyzing whether the more complex models are really able to provide better predictions.

Language: Jupyter Notebook - Size: 36.1 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

ekimetrics/pyepidemics

Open source epidemiological modeling in Python

Language: Jupyter Notebook - Size: 68.8 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 3

ablacan/ml-ci

A machine learning method for confidence interval (CI) computation with specific application to Covid-19 forecast on 54 countries.

Language: Python - Size: 218 MB - Last synced at: 11 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

antononcube/ECMMon-R

Epidemiologic Compartmental Modeling Monad in R

Language: HTML - Size: 1.31 MB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

Ritwik-Bhaduri/SEIR_misclassification-Delhi

Understanding dynamics of COVID-19 in Delhi, India, using compartmental model that incorporates Testing bias and Misclassification.

Language: R - Size: 20.3 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 1

JBris/beast2-experiments

Experiments with the BEAST 2 software

Language: Python - Size: 34.9 MB - Last synced at: 23 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

JBris/beast2-docker

Docker and Apptainer setup for the BEAST 2 software

Language: R - Size: 679 KB - Last synced at: 23 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

Gilbert-Sobremisana/https-doi.org-10.1016-j.jtice.2023.105076

Exploring characteristics of value-added production of anthraquinones in rhubarb via fermentation: Compartmental modelling and molecular docking analysis

Language: Python - Size: 13.7 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

Computer-Assisted-Clinical-Medicine/UMMPerfusion

Open Source Perfusion Analysis Plugin for OsiriX and Horos

Language: C++ - Size: 8.86 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 2

neurorishika/SEIR_QDPA-COVID_19

Code and Data for Gupta and Mohanta, et. al. (2020)

Language: Python - Size: 8.43 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

Kevger/Epidemic-Simulations

Interactive epidemic simulations with compartmental models from SI to MSIER

Language: Vue - Size: 1.32 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

MicheleDiSabato/NN_LearningOfRstar_COVID19

Machine learning algorithms for the calibration of epidemiological compartmental models: application to the Italian COVID-19 outbreaks in Italy and to the newly developed SUIHTER model.

Language: MATLAB - Size: 3.12 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

henryxsong/Coral-Reefsearchers

Effects of Overfishing on Coral Reef Ecosystems

Language: TeX - Size: 92.3 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

egruttadauria98/Modelling-the-US-fentanyl-epidemic

This repo contains the final work of the Simulation and Modeling class, part of the MSc in Data Science and Business Analytics @ Bocconi University

Language: Jupyter Notebook - Size: 4.7 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

LedaKatopodi/compartmental-models

COPASI Implementation of a 6-compartment SEIARD model for the simulation of the COVID-19 pandemic.

Language: Component Pascal - Size: 783 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

sepmein/cengceng

Infectious disease models implemented in python

Language: Python - Size: 48.8 KB - Last synced at: 2 months ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

bquilty25/outbreaks-public

Language: HTML - Size: 544 KB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 0

BIOSECURE-EU/parametra

Modelling database

Language: R - Size: 7.32 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

MI2YorkU/Rnaught

An R package and web application for estimating the basic reproduction number (R0) of infectious diseases.

Language: R - Size: 2.39 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1

HopkinsIDD/flepiMoP_site Fork of mmistakes/minimal-mistakes

Website for the Flexible Epidemic Modeling Pipeline

Language: JavaScript - Size: 102 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0