sir-model | Topic | Ecosyste.ms: Repos

Topic: "sir-model"

je-suis-tm/graph-theory

Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Randomized Distributed, Vizing, Topological Sort, DFS, BFS

Language: Jupyter Notebook - Size: 38.7 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 374 - Forks: 90

lisphilar/covid19-sir

CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

Language: Python - Size: 1.12 GB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 112 - Forks: 45

antonin-lfv/simulation_virus_covid-19

Simulating epidemics using Python

Language: Python - Size: 9.28 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 52 - Forks: 15

mattravenhall/BasicSIRModel

A simple SIR model in Python

Language: Python - Size: 43.9 KB - Last synced at: 9 months ago - Pushed at: about 7 years ago - Stars: 22 - Forks: 17

PingEnLu/Time-dependent_SIR_COVID-19

Codes for the paper "A Time-dependent SIR model for COVID-19 with Undetectable Infected Persons"

Language: Python - Size: 28.3 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 19 - Forks: 11

mjg211/phaseR

Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems

Language: R - Size: 2.38 MB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 15 - Forks: 3

metawards/MetaWards Fork of chryswoods/MetaWards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

Language: Python - Size: 160 MB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 6

p-j-r/covid-19

Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.

Language: Jupyter Notebook - Size: 20.9 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 13 - Forks: 8

UofUEpiBio/epiworldR

A general framework for quick epidemiological ABM models

Language: R - Size: 57.8 MB - Last synced at: 3 days ago - Pushed at: 10 days ago - Stars: 11 - Forks: 3

SilverLinings89/VirusSimulator

A virus simulation for pandemics based on the SIR-network concept.

Language: TypeScript - Size: 14.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 11 - Forks: 4

DemetersSon83/Mesa-SIR

A Mesa-based ABM library for epidemiological (SIR) modeling.

Language: Python - Size: 54.7 KB - Last synced at: 4 months ago - Pushed at: over 5 years ago - Stars: 11 - Forks: 9

paramrathour/Nonlinear-Dynamics

Files related to my Summer of Science Report on Nonlinear Dynamics

Language: TeX - Size: 65.4 MB - Last synced at: 6 months ago - Pushed at: almost 2 years ago - Stars: 10 - Forks: 3

nishi1612/Modelling-and-Simulation

CS302 Modelling and Simulation Weekly Assignments in python based on modelling different systems - SARS, Malaria, SIR

Language: Jupyter Notebook - Size: 12.5 MB - Last synced at: about 1 month ago - Pushed at: over 6 years ago - Stars: 9 - Forks: 2

maufadel/SIR_on_Gnutella

Simulation of a SIR Epidemic process on the Gnutella p2p network on Python

Language: Jupyter Notebook - Size: 665 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 7 - Forks: 1

open-sir/open-sir

Python SIR-x model implementation

Language: Python - Size: 1.03 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 8

adbecker/tsiR

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics

Language: R - Size: 1010 KB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 5

spang-lab/TenSIR

SIR model parameter estimation using a novel algorithm for differentiated uniformization.

Language: Python - Size: 7.54 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 1

xingrucz/fudab.github.io

Official website @ Github with content including COVID-19.

Language: HTML - Size: 12.2 GB - Last synced at: 9 days ago - Pushed at: over 4 years ago - Stars: 5 - Forks: 0

MatteoM95/Network-Dynamics-and-Learning

Homework and exercises from course Network Dynamics and Learning

Language: Jupyter Notebook - Size: 7.07 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 6

lorenzofelletti/sirsimx

Simple SIR Model Simulation

Language: JavaScript - Size: 500 KB - Last synced at: 4 months ago - Pushed at: about 3 years ago - Stars: 4 - Forks: 4

CNC-IISER-BHOPAL/Disease-Models-with-Python-Mesa

This repository is meant as a facilitator for all those who want to learn agent based disease modelling using the mesa framework in python. When I started out, there were too few examples for this on the net. Thankful to the community helping me learn, here I will share some of my insights.

Language: Jupyter Notebook - Size: 342 KB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 4 - Forks: 0

acrooks2/Four-Disease-Models Fork of YangZhouCSS/Four_models

Comparing four modeling approaches: System Dynamics, Agent-based Modeling, Cellular Automata, and Discrete Event Simulation using a SIR model as an example

Language: NetLogo - Size: 53.7 KB - Last synced at: 5 months ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 1

NightMachinery/stochastic

My Julia megarepo; an infectious disease model, a Poisson picture redrawing filter, a colorful animator of a 2D ising model, and more.

Language: HTML - Size: 78.4 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

migduroli/covid-uk-variant

More than a year after the onset of the CoVid-19 pandemic in the UK: lessons learned from a minimalistic model capturing essential aspects including social awareness and policy making

Language: Python - Size: 2.46 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 0

Forcoa-NET/SirModelShowCase

SIR model example with visualization on Karate Club network.

Language: Jupyter Notebook - Size: 1.02 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

cgado12/disseminationSimulator

A visualization in processing (java) that simulates how things spread inside a network.

Language: Processing - Size: 154 KB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 3 - Forks: 0

fusion809/fusion809.github.io

Franklin-powered website.

Language: JavaScript - Size: 18.4 MB - Last synced at: 15 days ago - Pushed at: 25 days ago - Stars: 2 - Forks: 0

Gabriel-Machado-GM/Study-of-linear-algebra-Contagion-and-Diseases

Epidemic Modeling Study: This study analyzes with Linear Algebra the progression of disease contagion within a population. Covid-19 Dashboard: We have created an interactive dashboard to analyze the data on the behavior of the Coronavirus in Brazil. The project is powered by a public CSV dataset.

Language: Python - Size: 2.49 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0

GwangWooKim/SIR-modeling

An application of PINN to SIR modeling

Language: Python - Size: 855 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 2

JBris/sbi-epidemiology

Simulation based inference for epidemiology

Language: HTML - Size: 836 KB - Last synced at: 4 months ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0

binDebug3/EVAdoption

(2024) Modeling electric vehicle adoption with differential equations by Dallin Stewart, Jeff Hansen, Gwen Martin, Eliza Powell

Language: Jupyter Notebook - Size: 5.68 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

fiomfd/Julia.COVID-19

These Julia programs download the open data of COVID-19 given by the Japanese Ministry of Health, Labour and Welfare, and do some information processing.

Language: Julia - Size: 712 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

rkolovanov/computing-mathematics 📦

Моделирование различных динамических процессов с использованием методов вычислительной математики

Language: Jupyter Notebook - Size: 826 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

ablacan/ml-ci

A machine learning method for confidence interval (CI) computation with specific application to Covid-19 forecast on 54 countries.

Language: Python - Size: 218 MB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

P2-718na/SIR-model-simulation

SIR model implementation for pandemic spread

Language: C++ - Size: 480 KB - Last synced at: 6 days ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

manumacc/epidemic-graph-simulation

Simulation of an epidemic on a random graph of choice according to discrete-time SIR and SIRV models and estimation of parameters by gradient descent

Language: Jupyter Notebook - Size: 344 KB - Last synced at: 10 months ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

Gdemaude/Gillespie

Numba accelerated implementation of Gillespie's algorithm for simulating stochastic processes

Language: Python - Size: 108 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

FilipeLopesPires/VideoViralizationTool

YouTube Video Viralization Tool: a mathematical tool to optimize efforts of making viral youtube videos.

Language: MATLAB - Size: 2.23 MB - Last synced at: 7 months ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

Quantalabs/Disease 📦

Based of of the 3b1b video, Simulating and Epidemic, this simulation simulates a disease outbreak in a community.

Language: JavaScript - Size: 89.8 KB - Last synced at: 5 months ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

siddsriv/SIR_model

Custom ODE solver (Euler method) to solve the SIR model differential equations

Language: Jupyter Notebook - Size: 224 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

InstituteForIndustrialEconomics/epidemic

Эпидемиологическая модель на языке Python. Порт https://github.com/neherlab/covid19_scenarios

Language: Python - Size: 104 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

rosasalberto/Covid-19-Model

Created a model based on original SIR to predict and control virus spread.

Language: Jupyter Notebook - Size: 538 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 2

Gleydar/py_epi_sim

Epidemic Simulator with a nice and usable UI, written in Python using Qt

Language: Python - Size: 2.27 MB - Last synced at: 5 months ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1

ssiddhantsharma/Simple-SIR-Model

A basic SIR model to improve my understanding on the subject.

Language: Python - Size: 43.9 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

alfonsoeromero/covid19_spain

Language: Jupyter Notebook - Size: 10.8 MB - Last synced at: 26 days ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

Cobord/Simple-ODEs

Various ODEs

Language: Jupyter Notebook - Size: 428 KB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0

haolamnm/ssir-module

[3004] A C++17-powered Python module for simulating the spread of disease in a grid-based population. Built with pybind11 and CMake.

Language: C++ - Size: 3.44 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

Sean-Higgins/Epidemiology-Models

All of my epidemiological predictive models, including a basic SIR model and it's modifications. This repository also has some other fun models, including the SIInZD model for zombie outbreaks, and a model to predict the population growth of the Diclonious race from Elfen Lied. These models are written in C/C++ and use OpenMP with others in Rust.

Language: C++ - Size: 7.95 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

JBris/AgentTorch-testing

Testing out AgentTorch for agent-based modelling

Language: Jupyter Notebook - Size: 179 KB - Last synced at: 2 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

MoezGouiaa/Modelling-HIV-Aids-and-fitting-with-data-in-South-africa

This is a project in order to simulate the data of infectious cases in south africa between 2000 and 2023 and to make a model which fits the data to evaluate the effect of treatment and consciousness in infections

Language: Jupyter Notebook - Size: 1.63 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 1

ekinderdiyok/information-diffusion-on-twitter

This repository hosts my master's thesis project.

Language: Jupyter Notebook - Size: 62.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

cornell-covid-modeling/simpar

A Python package for analyzing pandemic response measures

Language: Python - Size: 811 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

lshtm-tbmg/tbvax-pub

TBVAX Model

Language: R - Size: 62 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

Devadeut/MDF-SIR-Model

This application simulates and visualizes the SIR model for infectious disease spread.

Language: Jupyter Notebook - Size: 359 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

ngozzi/temporal-networks

Introduction to temporal networks and the activity driven framework with code

Language: Jupyter Notebook - Size: 5.08 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

meliksahturker/NetGen

Network Generator framework that simulates daily interactions in an urban town

Language: Python - Size: 22.5 KB - Last synced at: 7 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 1

asgutierrt/Covid19-Colombia

Curve fitting techniques and Epidemiology models

Language: Jupyter Notebook - Size: 2.98 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

paololapo/SIRS_model_on_graphs

Generalization of the famous SIR epidemiological model considering also virus variants and reinfections. Scale-free network via Barabási–Albert model.

Language: C++ - Size: 6.06 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

TomPoll/SIR-pancreatic-cancer-BDIPMN

A program to calculate the number of expected cases and the standardized incidence ratio of pancreatic cancer in a cohort of patients under surveillance

Language: R - Size: 1.24 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

CRIS-YANGYQ/Epidemic-Model-Taidi

泰迪杯A题：基于 SEIDR 的疫情数据分析及精准防控研究 Research on epidemic data analysis and precise prevention and control based on SEIDR model

Language: Jupyter Notebook - Size: 20.1 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

nejiko96/react-sir-like-model

SRI like model simulator

Language: JavaScript - Size: 6.32 MB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

Kevger/Epidemic-Simulations

Interactive epidemic simulations with compartmental models from SI to MSIER

Language: Vue - Size: 1.32 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

spyrchat/SIR-Virus-Spread-Model

SIR virus spread model in Python

Language: Python - Size: 9.77 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1

harrykipper/covid2

Model of sars-cov-2 infection with digital contact tracing, mutations and vaccines. Extends https://github.com/harrykipper/covid

Language: NetLogo - Size: 13.5 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

StokicDusan/SIRmodel

GNU Octave SIR model simulation for Spread of Disease

Language: MATLAB - Size: 407 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

mileo/python-sir

Python SIR / SIR-VETOR / Endemic / Dengue algorithm

Language: Jupyter Notebook - Size: 12.3 MB - Last synced at: 8 days ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

doscsy12/network_sci_analysis

Network data analysis using networkx, and gephi for visualisations.

Language: Jupyter Notebook - Size: 10.4 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1

Ethan-CS/Equations

Program to find number of differential equations needed to express an SIR(P) network exactly.

Language: Java - Size: 524 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

yoavram/SanJose

Adaptive social contact rates induce complex dynamics during epidemics

Language: Jupyter Notebook - Size: 22.2 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

uros-bojanic/epidemic-modelling

[Computer Modeling] SIR/SIRS/SIRQ/ISIR/SEIR compartmental models for numerical epidemic modelling in MATLAB.

Language: MATLAB - Size: 897 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

amilajack/sir-simulation

A disease spread simulation based on the SIR model

Language: JavaScript - Size: 4.91 MB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

janko-petkovic/plague-simulator

Delayed first order of approximation SIR model with interactive GUI.

Language: C++ - Size: 5.26 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

codewithmitesh/Covid-19-SIR-Model-

This Repo Containes a Software Built in Python which allows us to analysis the data of Covid-19 Cases From various States With Appropriate Graps And Also Implements its SIR Model.

Language: Python - Size: 127 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

tzxb018/covid_analysis

This python application takes the information from the spread of COVID-19 in the US and determines the effectiveness of the Stay At Home Orders for each state. To analyze the effectiveness, I used a cubic least square polynomial and the SIR model and compared these two models before and after date the stay at home orders were issued.

Language: Python - Size: 7.45 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

madhurima-nath/epi_model 📦

Language: Jupyter Notebook - Size: 647 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

karlosos/complex_networks

Complex Network course - 2020

Language: Jupyter Notebook - Size: 15.8 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 2

ahmedrachid/COVID19-Forecasting

COVID19 Forecasting and Data Analysis

Language: Python - Size: 1.6 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1

ayoubziate/Predicting-COVID-19-distribution-in-Morocco-

The current epidemic of coronavirus disease (COVID-19) has become a global crisis due to its rapid and widespread contamination worldwide. A good understanding of disease dynamics would significantly improve the control and prevention of COVID19. The unique features of this pandemic have limited the applications of all existing models We used, for the Moroccan context, a Markov chain system and a SIR modelfor predicting the distribution of the disease. The same stochasticmodel was used in Mexico, it characterizes the probabilitydistribution and the estimation of cases through a differentialequation (modified SIR model). With this model, we will be ableto characterize the disease and its evolution in order to be moreprepared and to promote more logical actions on the part ofpolicy makers than on the part of the general population.

Language: Jupyter Notebook - Size: 11.1 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

nitin-bommi/Indian-eSIR-model

Overview of SIR model and extension of it.

Size: 724 KB - Last synced at: 6 months ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 1

konsim83/SIR-Models

Qt application to simulate infection spreading

Language: Python - Size: 278 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 1

MarcoDibuono/COVID-19-Global-Outlook

Language: Jupyter Notebook - Size: 13.8 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

ShardulNalegave/pandemic-test

Hobby Project: A Simple Pandemic Simulator (Not completed)

Language: TypeScript - Size: 700 KB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

drbenvincent/SIRD-model-markov-chain

Simple example of SIR model without calculus

Language: Jupyter Notebook - Size: 870 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 1

Physics-Simulations/Epidemic-Spreading-in-Weighted-Networks

Two models of epidemic spreading in weighted networks using Julia.

Language: Jupyter Notebook - Size: 20.5 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

purvilmehta06/Model-and-Simulation

This repository contains the lab work of the course Model and Simulation. From building a model with proper assumption and differential equation to simulate that in the computer via python code is presented in this repository.

Size: 1.4 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

JerryLingjieMei/Competitive_SIR

A model for studying competing rumor epidemics

Language: Python - Size: 206 MB - Last synced at: over 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1

NassimAyad87/EpiSimR

EpiSimR is an R Shiny application designed for simulating the dynamics of epidemic and endemic disease spread. It utilizes deterministic compartmental mathematical models to provide interactive visualizations and insights into disease transmission and control strategies.

Language: R - Size: 94.7 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0