An open API service providing repository metadata for many open source software ecosystems.

Topic: "ode-model"

hukenovs/chaospy

Chaotic attractors with python (Lorenz, Rossler, Rikitake etc.)

Language: Python - Size: 3.77 MB - Last synced at: 9 months ago - Pushed at: almost 2 years ago - Stars: 95 - Forks: 21

iliailmer/ParameterEstimation.jl

ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.

Language: MATLAB - Size: 14.1 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 30 - Forks: 8

prs-eth/ODEcrop

[TGRS21] Crop Classification under Varying Cloud Cover with Neural Ordinary Differential Equations

Language: Python - Size: 528 MB - Last synced at: 9 months ago - Pushed at: almost 4 years ago - Stars: 24 - Forks: 3

svenlr/car-physics-pacejka

Vehicle dynamics with a sophisticated friction model and drive-train model that can be used to augment any multi-body simulation (such as Gazebo) involving vehicles.

Language: Python - Size: 46.9 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 13 - Forks: 1

jranke/mkin

R package for fitting kinetic models with one or more state variables to chemical degradation data

Language: HTML - Size: 196 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 3

sbmlteam/moccasin

MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.

Language: Python - Size: 61.4 MB - Last synced at: 18 days ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 2

x3042/ExactODEReduction.jl

Exact reduction of ODE models via linear transformations

Language: Julia - Size: 124 MB - Last synced at: 4 months ago - Pushed at: almost 2 years ago - Stars: 12 - Forks: 3

yaml2sbml-dev/yaml2sbml

Tool to convert an ODE model specified in the YAML format to SBML.

Language: Python - Size: 1.4 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 7

martinjrobins/diffsl

Language: Rust - Size: 2.3 MB - Last synced at: 10 days ago - Pushed at: 12 days ago - Stars: 10 - Forks: 4

USEPA/MCSimMod

MCSim Models in R

Language: C - Size: 1.65 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 0

ComputationalScienceLaboratory/ODE-Test-Problems

A MATLAB suite of initial value problems

Language: MATLAB - Size: 57 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 9 - Forks: 3

alexvoronov/mpc-spring-mass-example

MPC for spring mass example

Language: MATLAB - Size: 443 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 9 - Forks: 5

BanaanKiamanesh/ManiDyn

ManiDyn is a MATLAB toolbox for symbolic modelling of serial-link robot Manipulators.

Language: MATLAB - Size: 79.1 KB - Last synced at: 4 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 0

DenisTitovLab/Glycolysis.jl

Package for modeling glycolysis activity

Language: Julia - Size: 93.3 MB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 6 - Forks: 0

BanaanKiamanesh/NN-Obs-Id-MIMO-Nonlinear-Systems

Implementation of a recurrent neural network based Observer/Identifier for highly Non-Linear Dynamical Systems, using the Lorenz Attractor as a test case.

Language: MATLAB - Size: 334 KB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

MeetGandhi/Reconstruction-of-Trajectory-recorded-with-Missing-Markers

This repository deals with analyzing various Neural Network approaches and finding the one with the most accurate reconstruction of motion captured trajectories recorded with missing markers in softwares like Vicon Nexus

Language: Python - Size: 182 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 5 - Forks: 3

Shvartsman-Lab/vertX3D

Language: C++ - Size: 1.06 MB - Last synced at: 5 months ago - Pushed at: over 6 years ago - Stars: 5 - Forks: 2

jodemaey/LayerCake

LayerCake is framework to design systems of partial differential equations (PDEs), and convert them to ordinary differential equations (ODEs) via Galerkin-type expansions.

Language: Python - Size: 266 KB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 4 - Forks: 1

JBris/physics_informed_neural_networks_tutorial

Going through the tutorial on Physics-informed Neural Networks: https://github.com/madagra/basic-pinn

Language: Jupyter Notebook - Size: 142 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 0

openPfizer/vpop-gen

Virtual population generation, fitting, and benchmarking.

Language: Matlab - Size: 153 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 4 - Forks: 0

venetakoleva/SEIRSVBHSimulator

Interactive MATLAB-based SEIRSVBH Simulator for COVID-19 modeling and analysis. Performs error quantification, parameter estimation, and direct simulations using officially reported data for Bulgaria (2020–2023).

Language: MATLAB - Size: 2.33 MB - Last synced at: 17 days ago - Pushed at: 18 days ago - Stars: 3 - Forks: 0

ntumitolab/mitodyn-ode

Code for mitochondrial dynamics ODE manuscript.

Language: Julia - Size: 1.99 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

abhogan/rsv_model_fitting

Code for fitting SEIRS transmission models for respiratory syncytial virus (RSV) to incidence data

Language: MATLAB - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 2

ICB-DCM/ODEMM

MATLAB Toolbox for ODE constrained mixture models

Language: MATLAB - Size: 82.5 MB - Last synced at: 7 months ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 1

meeravarshneya1234/IKs_stabilizes_APs

Source code for "Slow Delayed Rectifier Protects Against Arrhythmic Activity Across Multiple Species - A Computational Study"

Language: MATLAB - Size: 2.82 MB - Last synced at: 7 months ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0

matthiaskoenig/parameter-variability

Bayesian models for ODE models in the Systems Biology Markup Language (SBML)

Language: Python - Size: 5.22 MB - Last synced at: 19 days ago - Pushed at: 22 days ago - Stars: 2 - Forks: 0

aikarimov/ODERECON

A set of codes in MATLAB for ODE reconstruction using least-square method

Language: MATLAB - Size: 620 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 1

ntumitolab/mitochondria-retrograde-model 📦

Mitochondria Retrograde (RTG) Signalling model

Language: Julia - Size: 9.71 MB - Last synced at: 7 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

JBris/pymc_ode

Going through the tutorials for integrating PyMC with ODEs

Language: Jupyter Notebook - Size: 4.28 MB - Last synced at: 10 months ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

akawincent/pendulum_system

This project uses Python to simulate single pendulum and double pendulum. Simultaneously we explore the influence of different parameters on the motion of the system.

Language: Python - Size: 0 Bytes - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

felciabatta/Longitudinal-Aircraft-Dynamics 📦

Basic script for modelling aircraft 'phugoid motion'.

Language: MATLAB - Size: 3.91 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 2

hsprcode/Robot-Arm-Modelling

MATLAB Codes written from scratch to model robot arms, which can be used as industrial robot manipulators and helper robots.

Language: MATLAB - Size: 13.7 KB - Last synced at: 9 months ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 1

bigfatbernie/IBLmodellingDEs

Modelling with Differential and Difference Equations - Textbook

Language: TeX - Size: 143 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 2

florianst/traploading

ODE solvers simulating the loading of atoms into a combined magnetic and optical dipole trap

Language: Python - Size: 320 KB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0

sg-s/model

Elegant Mathematica-style model manipulation, fitting and exploration in MATLAB.

Language: Matlab - Size: 3.2 MB - Last synced at: 5 months ago - Pushed at: over 8 years ago - Stars: 2 - Forks: 1

BDomzal/drones

This repository contains simulations of drones movement according to ODE model by Agata Lonc, Barbara Domżał, Monika J. Piotrowska.

Language: Jupyter Notebook - Size: 9.44 MB - Last synced at: 17 days ago - Pushed at: 19 days ago - Stars: 1 - Forks: 1

jkharv/HigherOrderFoodwebs.jl

Use hypergraphs to create foodweb models which include non-trophic effects

Language: Julia - Size: 413 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

giansimone/ACC22

2022 American Control Conference.

Language: MATLAB - Size: 204 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

jonathanfischer97/InteractiveOscillator

Interactive sensitivity analysis of my biochemical oscillator model. Uses GLMakie to allow fast and reactive resolving and plotting of the ODE solutions.

Language: Julia - Size: 2.64 MB - Last synced at: 10 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

chrishajj/Solar-System-Simulation

Making use of ODEs to solve the equations of motion of the solar system and the interaction between the planets and the sun. The code includes an output GIF animation of the result.

Language: Jupyter Notebook - Size: 1.85 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

KindlyGentleman/PHYS-Pendulum-Powered-Cart

This repository contains a simulation of a pendulum-powered cart. The simulation models the dynamics of a cart that is powered by the swinging of a pendulum attached to it. The motion of the cart is determined by the motion of the pendulum, which is affected by the force applied to the cart and the pendulum's initial conditions.

Language: Python - Size: 5.06 MB - Last synced at: almost 3 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

ewysocka/rb_vs_ode_model_of_darpp-32

Repository storing molecular rule-based models in Kappa language and Python-based figures published in PeerJ: https://doi.org/10.7717/peerj.14516

Size: 239 MB - Last synced at: almost 3 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1

giansimone/MIRELLA

MIRELLA: A mathematical model explains the effect of miRNA (MI) REgulation on intracellular resource aLLocAtion

Language: Jupyter Notebook - Size: 1.11 MB - Last synced at: 7 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

SethMinor/Torus-ODE

Repo for MATLAB material somehow related to the motion of vortices on curved surfaces.

Language: MATLAB - Size: 55.7 KB - Last synced at: almost 3 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

dongmingli-Ben/covid-19-modeling

COVID-19 modeling with ODEs and Markov chains. Validation results are provided, including analysis of the outbreak under the so called 'dynamic clearing' strategy.

Language: Python - Size: 5.99 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

MapMaths/Pendulum

A Scratch project.

Size: 22.5 KB - Last synced at: almost 3 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

abhogan/rsv_models

Ordinary differential equation dynamic models for respiratory syncytial virus (RSV) transmission

Language: Matlab - Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 0

bibymaths/phoskintime

An optimization driven ODE-based modeling pipeline for analyzing cell-signaling dynamics over time.

Language: Python - Size: 36 MB - Last synced at: 6 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 1

pcabala/AttractorBuilder

Blender add-on to generate strange attractors.

Language: Python - Size: 275 MB - Last synced at: 10 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0

bibymaths/hsp90-smfret-model

A complete end-to-end pipeline for single-molecule FRET trajectory processing, 3-state kinetic modeling with bleaching, global ensemble fitting, bootstrapping, and sensitivity analysis for Hsp90 dynamics.

Language: Python - Size: 1.23 MB - Last synced at: 18 days ago - Pushed at: 20 days ago - Stars: 0 - Forks: 0

chvandorp/hboms

Python package for automatically generating Stan source code for hierarchical Bayesian ordinary differential equation models.

Language: Jupyter Notebook - Size: 3.18 MB - Last synced at: 19 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0

JobinJohn24/Bacterial_Growth_Simulation

An R-based ODE model for simulating bacterial growth dynamics under antibiotic exposure with parameter fitting and dosing strategy optimization.

Language: R - Size: 796 KB - Last synced at: 20 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

hsannav/simulator-epidemic-computer-virus

Simulator for SAIR model proposed in Piqueira, J. R. C., Navarro, B. F., & Monteiro, L. H. A. (2005). Epidemiological models applied to viruses in computer networks. Journal of Computer and System Sciences.

Language: Python - Size: 14.6 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

itchinda/pyodys-project

This repository contains a robust and flexible Python package for solving ordinary differential equations (ODEs). It supports both Runge–Kutta schemes (explicit, DIRK) and BDF multistep methods, with adaptive time-stepping and strong support for sparse Jacobians--making it well-suited for large-scale and stiff problems.

Language: Python - Size: 1.55 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

muichi-mon/dragonfly

A Java-based space mission simulator, from Earth to Titan, that models the Solar System with N-body physics.

Language: Java - Size: 6.73 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

muichi-mon/sim-plot-ode

A lightweight Java project for simulating and plotting ODEs — ideal for learning and experimenting with dynamic systems modelling.

Language: Java - Size: 466 KB - Last synced at: 4 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

jananour00/ML-Numerical-Modeling-of-Glucose-Insulin-Dynamics-in-Diabetes Fork of Ibrahim-Abdelqader/ML-Numerical-Diabetes-Glucose-ODE-Modeling

A hybrid machine learning and numerical modeling approach for simulating glucose-insulin interactions in diabetic patients using ordinary differential equations (ODEs). The project compares classical solvers like Runge-Kutta with data-driven ML predictors to analyze the response to glucose infusion and varying pancreatic sensitivity.

Language: Jupyter Notebook - Size: 9.02 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

otvam/magnetic_ode_models

Soft Magnetic Materials and Ordinary Differential Equations: From Linear Circuits to Neural Network Models

Language: Python - Size: 16.3 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

CropXR/BADDADAN

BADDADAN is a proof of concept which builds ODE models of gene modules to study the response of A. thaliana to stress

Language: Python - Size: 79.8 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

phuongho43/optopi

Modeling light inducible protein interaction systems via ODEs.

Language: Python - Size: 29.1 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

FS-CodeBase/Model-and-Sensitivity-Analysis-of-COVID-19-Transmission-on-a-University-Campus

Modeling and Global Sensitivity Analysis of Strategies to Mitigate Covid-19 Transmission on a Structured College Campus

Language: MATLAB - Size: 1.11 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

iretes/rock-scissors-paper

🔁 Analysis of a system with three species in a competitive loop.

Language: Jupyter Notebook - Size: 400 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

JRaviLab/start-bycc

Modeling the START transition in the budding yeast cell cycle

Size: 730 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

achattaraj/OptimalCondensateSize

Multi-condensate state as a functional strategy to optimize the cell signaling output

Language: Jupyter Notebook - Size: 346 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ZarnitsynaLab/ArielNikas-HumoralMemoryEnhancingInfection

Code and data associated with the paper 'When does humoral memory enhance infection?' to be published in Plos Computational Biology

Size: 33.2 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

shelestvitru/three-body

Numerical solution for the ODE of motion under gravity forces for n bodies and correspondent visualization

Language: Jupyter Notebook - Size: 144 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

YangLab-um/interactive-cell-cycle

An interactive web application for exploring cell cycle models

Language: Python - Size: 25.4 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

olledejong/Sfp1-Translocation-Model

Part of MSc Biology Project (2/2). Ordinary Differential Equations (ODE) model for modelling protein, more specifically Sfp1, translocation.

Language: Python - Size: 6.82 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

mist90/SM_Simulator

Stepper motor simulator

Language: Python - Size: 4.88 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

juliorodrigues07/tumor_growth 📦

Implementation of a mammary tumor growth ODE model.

Language: Python - Size: 2.11 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

yubocai-poly/Reachability-Problem-of-ODE

Quadratization preprocessing for the reachability Problem of ODE

Language: Jupyter Notebook - Size: 23.5 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

abhisheksena/Optimal_resource

MATLAB scripts for generating the figures presented in the manuscript "Quantification of optimal resource allocation strategies for controlling epidemics"

Language: MATLAB - Size: 39.1 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

juliorodrigues07/computational_modeling

Computational modeling practical exercises.

Language: Python - Size: 2.61 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

kailanefelix/modeling-covid-with-ode

Analisamos os dados do Covid 19 no estado de Pernambuco, com foco em entender, visualizar e modelar o impacto da vacinação no combate à pandemia e para isso, utilizamos o modelo matemático SIDR.

Language: Jupyter Notebook - Size: 1.4 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

jacons/Chemical-Reactions-Simulator

Stochastic Simulator of Chemical Reactions

Language: Python - Size: 234 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

MacEngineer2020/Summer-research-

Summer research June 2020- September 2020. This repository contains code for the model and machine learning for growth control.

Size: 80.1 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

tmkeating/predator_prey_gui

MATLAB GUI with editable variables that solves the predator-prey-quarry-resource-scavenger model with seasonality as proposed by Jansen and Gorder: https://doi.org/10.1007/s12080-017-0346-z

Language: MATLAB - Size: 141 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Hickles02/FYP478

This is the repository for my Final Year Project, part of my BEng degree.

Language: MATLAB - Size: 7.3 MB - Last synced at: almost 3 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

ojcharles/does_my_ode_model_fit_junk

Language: R - Size: 717 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

joschwrzr/High-Res-Incubation_modelFit

Applying three different model approaches to an incuabtion data-set

Language: R - Size: 85 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

shraddhapuntambekar/Mathematical-model-for-sumoylation

Mathematical model for sumoylation

Language: Mathematica - Size: 729 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

hluebbering/model-neurons

Mathematical modeling of neurons and neuronal activity

Language: R - Size: 8.85 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

iliailmer/ODESystems

ODE Systems for Benchmarking Parameter Identifiability Code

Language: Julia - Size: 31.3 KB - Last synced at: 3 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

vsukhor/mitoSim-postProcessor

Complements mitoSim - the simulator of cell mitochondria as a spacelss graph.

Language: Python - Size: 4.77 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

giansimone/embedded-cycloop

Language: MATLAB - Size: 18.6 KB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

hailelagi/simulacra 📦

Learning about optimizing objective functions, efficient modeling and simulation algorithms in computational science.

Language: Python - Size: 2.05 MB - Last synced at: 3 months ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

ethank5149/DifferentialEquations

Differential equation solving in Python and C/C++

Size: 2.51 MB - Last synced at: 3 months ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

juanvillada/Microbial-Consortia-Dynamics-R

Modeling the dynamics of microbial communities (ODEs)

Language: R - Size: 586 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

AnnaShcher/abm_continuous_malaria_model

Agent-based and continuous Malaria Modelling

Size: 21.5 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

biomystery/duration_decode_manuscript

Code and Data for Gene Regulatory Strategies paper.

Language: PostScript - Size: 216 MB - Last synced at: 10 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

biomystery/TLR4_signaling_model

Code and data for TRL4 signaling paper.

Language: Mathematica - Size: 459 MB - Last synced at: 4 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

biomystery/TNF_regulation

Collabration with Andrew. Model's coding for TNF regulation in LPS, CpG and PIC

Language: MATLAB - Size: 38.4 MB - Last synced at: 7 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

emaballarin/cathode 📦

Putting [A]NODEs ([Augmented] Neural ODEs) to work, for Time Series prediction and simulation

Language: Python - Size: 16.3 MB - Last synced at: almost 3 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

vislupus/mathematical-modeling

Variety of interesting mathematical models in Python

Language: Jupyter Notebook - Size: 2.69 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

PStegmann/COVID19-SIR-model

A very simple SIR model implementation and Levenberg-Marquardt fit with the Johns Hopkins CSSE data for COVID-19.

Language: R - Size: 166 KB - Last synced at: almost 3 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

bnetlab/Alzheimer_Ab_switching_ode_model

ODE simulation of Abeta on-off pathway switching

Language: MATLAB - Size: 1.17 MB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

okadalabipr/egf_signaling

Computational modeling of the short term pattern of cellular responses to epidermal growth factor

Language: MATLAB - Size: 542 KB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

BuckanovNikita/MathematicalModeling

Математическое моделирование. МИЭТ

Language: Jupyter Notebook - Size: 15.5 MB - Last synced at: almost 3 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

asack20/skydiver-simulation

High-Altitude Skydiver Simulation

Language: MATLAB - Size: 629 KB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

PratipRana/Strain_specific_Fibril_Propagation-

Dean, Dexter N., et al. "Strain-specific Fibril Propagation by an Aβ Dodecamer." Scientific reports 7 (2017): 40787.

Language: Matlab - Size: 1.95 KB - Last synced at: about 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0

Related Topics
ode 21 matlab 20 differential-equations 12 mathematical-modelling 12 python 9 ode-solver 8 r 7 simulation 7 ordinary-differential-equations 7 systems-biology 6 numerical-methods 6 dynamical-systems 6 covid-19 5 modeling 5 julia 4 optimization 3 julia-language 3 sbml 3 lotka-volterra 3 data-visualization 3 parameter-estimation 3 pendulum-simulation 3 symbolic-computation 3 simulations 3 sir-model 3 computational-biology 3 attractors 3 mitochondria 3 ode-simulation 2 genetic-algorithm 2 neural-networks 2 biology 2 dynamics 2 dynamic-system-modeling 2 odes 2 gene-expression-dynamics 2 numerical-analysis 2 physics-simulation 2 jupyter-book 2 gillespie-algorithm 2 solar-system 2 simulation-modeling 2 pde-solver 2 robotics 2 virtual-population 2 jupyter-notebook 2 quantitative-systems-pharmacology 2 modelling 2 qsp 2 biological-systems-design 2 n-body-simulation 2 chaos-theory 2 pymc 2 bayesian 2 n-body-problem 2 runge-kutta-4 2 scipy 2 alzheimers-disease 2 mathematical-biology 2 protein-aggregation 2 cell-cycle 2 respiratory 2 lstm 2 mathematica 2 rnn 2 kinetic-modeling 2 machine-learning 2 differential-evolution 2 student-project 2 seir-model 2 pde 2 chemical-reactions 2 system-identification 2 lotka-volterra-model 2 network-analysis 2 runge-kutta 2 sobol-indices 1 public-health-policies 1 mitigation-strategies 1 global-sensitivity-analysis 1 campus-safety-measures 1 cmcs 1 tau-leaping 1 cell-signaling 1 optogenetics 1 dynamic-systems 1 euler 1 fitzhugh-nagumo 1 fitzhugh-nagumo-model 1 java 1 java-fx 1 javafx 1 blender-addon 1 mrna-degradation 1 kinase-modeling 1 kinase-activity-predictions 1 vcell 1 signaling-condensates 1 reaction-diffusion 1 phase-transition 1