YiranJing/Coronavirus-Epidemic-COVID-19

👩🏻‍⚕️Covid-19 estimation and forecast using statistical model; 新型冠状病毒肺炎统计模型预测 (Jan 2020)

Language: Jupyter Notebook - Size: 45 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 243 - Forks: 69

AshtonIzmev/covid-19-pandemic-simulation

"Life simulation" of a SEIR inspired model to better understand pandemic using python

Language: Python - Size: 2.48 MB - Last synced at: 12 days ago - Pushed at: about 4 years ago - Stars: 30 - Forks: 4

jpmattern/seir-covid19

Language: Jupyter Notebook - Size: 12.9 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 6

UofUEpiBio/epiworldR

A general framework for quick epidemiological ABM models

Language: R - Size: 54.2 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 9 - Forks: 3

Gopal-Dahale/Distribution-and-Requirement-of-Medical-Resources-for-Covid-19-and-Factors-Affecting-Hospitalization

Predict admission to the ICU of confirmed cases & number of people who'll get infected and more.

Language: Jupyter Notebook - Size: 8.4 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 6 - Forks: 2

Taha-Rouabah/COVID-19

COVID-19 modeling

Language: Python - Size: 383 KB - Last synced at: 16 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 1

timueh/PandemicModeling

Modeling pandemics subject to uncertainties

Language: Julia - Size: 633 KB - Last synced at: about 1 month ago - Pushed at: about 5 years ago - Stars: 5 - Forks: 1

GeoDS/Travel-Network-SEIR

a travel-network-based susceptible-exposed-infectious-removed (SEIR) mathematical compartmental model ODE system.

Language: MATLAB - Size: 1.17 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 2

CEIDatUGA/COVID-GA-model

Code for fitting and simulating a stochastic, mechanistic model of COVID-19 transmission in Georgia.

Language: HTML - Size: 3.16 GB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 2

Shakeri-Lab/COVID-SEIR

A stochastic epidemiological model that supplements the conventional reported cases with pooled samples from wastewater for assessing the overall SARS-CoV-2 burden at the community level.

Language: R - Size: 17.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1

jpcorb20/covid19-transmission-ukf

With this repository, I derive the time-dependent R0 coefficient of the COVID-19 with the Unscented Kalman Filter from the data gathered by John Hopkins assuming the SEIR model.

Language: Python - Size: 208 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 1

Quang-Vinh/covid-prediction

COVID-19 forecasting in Canada

Language: Jupyter Notebook - Size: 102 MB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 0

CheranMahalingam/COVID-19_Projections_SEIR_Model

A react-flask webscraping application to make real-time COVID-19 projections using an SEIR model with EC2 deployment instructions

Language: JavaScript - Size: 570 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

Aveek-Saha/CovidAnalysis

Analyzing the spread of the novel Coronavirus COVID-19

Language: Jupyter Notebook - Size: 43.2 MB - Last synced at: 15 days ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

Ritwik-Bhaduri/SEIR_misclassification-Delhi

Understanding dynamics of COVID-19 in Delhi, India, using compartmental model that incorporates Testing bias and Misclassification.

Language: R - Size: 20.3 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

fusion809/fusion809.github.io

Franklin-powered website.

Language: HTML - Size: 8.48 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

jandraor/preparedness

Language: Mathematica - Size: 43.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

nejiko96/react-sir-like-model

SRI like model simulator

Language: JavaScript - Size: 6.32 MB - Last synced at: about 12 hours ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

TB-DevAcc/MVSEIQRD_Model

A simulation of the coronavirus pandemic in Germany based on the SEIR model.

Language: Jupyter Notebook - Size: 37.3 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

sedaradoykova/pomp_handover

Handover code for BDI Summer Studentship 2021. Contains code attepmting to adapt Dr Tom Crellen's difference-equation waning COVID-19 immunity transmission-dynamic model to the pomp framework with the ultimate goal of parameter estimation.

Size: 838 KB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

jandraor/SEIR_cohorts_calibration

Epidemics (2020)

Language: Stan - Size: 961 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

hugo1005/A-Model-Based-Approach-To-Assess-Epidemic-Risk

Dolan, H., Rastelli, R. A Model-Based Approach to Assess Epidemic Risk. Stat Biosci (2021). https://doi.org/10.1007/s12561-021-09329-z

Language: Jupyter Notebook - Size: 14.1 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

selcukorkmaz/genSEIR

Generalized SEIR modeling for COVID-19 outbreak

Language: R - Size: 499 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

mkhalai/Coronavirus-SEIR-model

Estimating SEIR model parameters for novel coronavirus in Hubei province, China.

Language: Jupyter Notebook - Size: 225 KB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1

cch230/Duration-to-BEP-using-the-SEIR-Model-Infectious-Disease-Symptom-Model-

The period until the break-even point (BEP) using the SEIR (Infectious Disease Infection Model) was calculated.

Language: Python - Size: 31.3 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

aadilk96/Epidemiological-Estimating-of-COVID-19

Online dashboard used to track and forecast the spread of COVID-19.

Language: Python - Size: 137 KB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

tbuytaer/covid19 Fork of glouppe/covid19be

Models for calculating the spread of COVID-19

Language: Mathematica - Size: 29.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

rodralez/covid-19

Files for modelling COVID-19 virus

Language: MATLAB - Size: 2.12 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 2

konsim83/SIR-Models

Qt application to simulate infection spreading

Language: Python - Size: 278 KB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1

adamhsparks/epicrop

Simulation modelling of crop diseases using a Susceptible-Exposed-Infectious-Removed (SEIR) model in R

Language: - Size: 14.4 MB - Last synced at: 2 months ago - Stars: 1 - Forks: 0

NassimAyad87/EpiSimR

EpiSimR is an R Shiny application designed for simulating the dynamics of epidemic and endemic disease spread. It utilizes deterministic compartmental mathematical models to provide interactive visualizations and insights into disease transmission and control strategies.

Language: R - Size: 82 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

FS-CodeBase/gsa_of_covid19_transmission_on_a_university_campus

Modeling and Global Sensitivity Analysis of Strategies to Mitigate Covid-19 Transmission on a Structured College Campus

Language: MATLAB - Size: 1.11 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

niccolozanotti/epidemic-seir-model

A C++ simulation of the spread of an epidemic using SEIR model based on SMOOTH (http://dx.doi.org/10.1145/2068897.2068957) mobility model

Language: C++ - Size: 188 MB - Last synced at: 4 days ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

jandraor/delays

R. Soc. Open Sci (2023)

Language: R - Size: 2.29 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

nnchung/SEIR-Model

Language: Python - Size: 18.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

muzammilmalik01/SIR-SEIR-Model

The SIR & SEIR model is a mathematical model used to describe the spread of infectious diseases. Source: ode_book

Language: Python - Size: 607 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

yoavram-lab/EffectiveNPI

Repo for: Kohanovski, Obolski, Ram (2022) "Inferring the effective start dates of non-pharmaceutical interventions during COVID-19 outbreaks". IJID. doi:10.1016/j.ijid.2021.12.364

Language: Jupyter Notebook - Size: 103 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

greenhandatsjtu/COVID-19-CA-SEIR

Simulation for spreading of COVID-19 using CA-SEIR model

Language: Python - Size: 1.22 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

sscollis/sanseir

Solve a stochastic SEIR model for disease progression

Language: Fortran - Size: 4.41 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

angad-cheema/SEIRcovidmodel

Quick extended SEIR model I used to attempt to predict COVID 19 spread in Minnesota in March 2020. Wasn't very accurate.

Language: Mathematica - Size: 303 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Zoey1102/Covid-and-the-hazards-of-opportunistic-sampling

Language: R - Size: 23.4 KB - Last synced at: 3 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

tbuytaer/covid-19-website

Website to visualize COVID-19 data

Language: Vue - Size: 1.61 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

Jeevesh28/SIR-Modelling-Covid-19

Models for the outbreak of infectious disease (Covid-19) into a susceptible population (Colleges) using standard epidemiological models (SIR, SEIR, SEIR with Control)

Language: Jupyter Notebook - Size: 21.5 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

sigeek/fitting-covid-19

Final project for the course "Modelli Matematici per la Biomedicina" at Politecnico di Torino, academic year 2020/2021

Language: Jupyter Notebook - Size: 33 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

liloheinrich/ModSim

Modeling and Simulation | Fall 2019 | Coursework

Language: HTML - Size: 37.4 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

aprabaswara/Statistical-Programming-Task-2-Covid-and-the-hazards-of-opportunistic-sampling-Group-21

COVID and the Hazards of Opportunistic Sampling

Language: R - Size: 21.5 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

MarieLanger/Interactive-SIRmodel-UI

Interactive program to plot SIR-model with various extensions.

Size: 168 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

sjanasek/seir-model

time-discrete seir-model for predicting covid-19 scenarios written in r language for my bachelor-thesis

Language: R - Size: 53.7 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

amilovanovikj/ModelingAndSimulation

Simulation of COVID spread in generated network using a SEIR model. View the code and simulations at:

Language: Jupyter Notebook - Size: 80.9 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

mtsokol/epidemic-modelling-workshop

An introduction to sensitivity analysis and 4D-Var data assimilation method in epidemic modelling setting

Language: Jupyter Notebook - Size: 438 KB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1

akerkow/bush-mosquito-flight-simulator

This repository contains the model scripts for the Linkage of a compartment model for West-Nile virus with a flight simulator for vecor mosquitoes

Language: Python - Size: 827 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ChiaraDiBonaventura/viral_marketing

Code to model a viral marketing campaign. Different simulations include SEIR Model and SEIR Model with two risk-groups as well as sensitivity analysis.

Language: Jupyter Notebook - Size: 795 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

nadlerBen/Covid19-ML-Project

Machine Learning project for the course Learning and Optimization 097209 @ Technion

Language: Python - Size: 6.7 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

WanjohiWanjohi/corona-spread-prediction

A repository that focuses on epidemiology modelling , with SEIR in particular as applied to the prediction of the spread COVID-19 virus in 2020 for the week of 10th August in Senegal

Language: Jupyter Notebook - Size: 745 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

rodosingh/SEIR-Modelling-of-COVID-19

Here we have taken Covid-19 data for Qatar from [Kaggle](https://www.kaggle.com/sudalairajkumar/novel-corona-virus-2019-dataset?select=covid_19_data.csv)

Language: Jupyter Notebook - Size: 2.3 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

8-vishal/Covid-19_Visualizer

Visualize the spread of COVID-19 epidemic with SEIR model.

Language: Python - Size: 287 KB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

pstarszyk/covid19_spread_model

experimentation with SEIR models on beginning of pandemic data

Language: Jupyter Notebook - Size: 3.71 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

KryKis/seir_es

Computational model of epidemics (SEIR model)

Language: C - Size: 1.95 KB - Last synced at: 11 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

a/Infectious-Disease-Modeling

Modeling infectious diseases with the SIR model and variations

Language: Python - Size: 3.4 MB - Last synced at: over 1 year ago - Stars: 0 - Forks: 0