Chaste/Chaste

Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

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iliailmer/ParameterEstimation.jl

ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.

Language: MATLAB - Size: 14.1 MB - Last synced at: 7 days ago - Pushed at: 20 days ago - Stars: 28 - Forks: 8

JuliaEpi/MathEpiDeepLearning

Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.

Language: JavaScript - Size: 3.19 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 19 - Forks: 6

americocunhajr/EPIDEMIC

EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.

Language: MATLAB - Size: 26.7 MB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 16 - Forks: 5

Mathepia/awesome-sciml

Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.

Language: JavaScript - Size: 1.56 MB - Last synced at: 6 days ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 1

pmontalb/TuringPatterns

C++/CUDA Implementation of the most popular reaction-diffusion dynamics

Language: Cuda - Size: 100 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 13 - Forks: 0

americocunhajr/COVID19RJ

Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.

Language: Jupyter Notebook - Size: 10.7 GB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 8 - Forks: 2

JuliaEpi/MathepiaModels.jl

Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl

Language: Julia - Size: 125 KB - Last synced at: 4 days ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 1

ethrya/circadianGlucose

Physically Based Modelling of Cirdadian Glucose Dynamics

Language: Matlab - Size: 251 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 2

americocunhajr/epidWaves

epidWaves is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data.

Language: MATLAB - Size: 9.82 MB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 2

Song921012/MathEpiDeepLearningTutorial

Tutorials on math epidemiology and epidemiology informed deep learning methods

Language: Julia - Size: 57.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1

norregaarden/bioscillators.com

Exploring biological networks with javascript

Language: HTML - Size: 10.1 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

leihuang/rxnnet

A Python package for representing reaction networks and simulating their behaviors

Language: Python - Size: 54.7 KB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 3 - Forks: 3

JuliaEpi/Mathepia.jl

Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.

Language: Julia - Size: 104 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

Layton-Lab/nephron

Computational models for epithelial transport along the nephron.

Language: Python - Size: 205 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

PabRod/Chaos-and-neutrality

Analysis script for "Neutral competition boosts chaos in food webs"

Language: MATLAB - Size: 37.9 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

jtbates/MMiB_R

R code for Allman And Rhodes' book "Mathematical Models in Biology: An Introduction"

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metelkin/metelkin.github.io

Personal page

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dynova/dynova.github.io

Postdoctoral Fellow at Dartmouth College

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Mk9207/Constructive-Cancer-Control-Theory-

A mathematical and AI-assisted framework to define, suppress, and treat cancer based on constructive principles. Includes proof equations, monitoring models, and patient-specific treatment paths. がんの発生・監視・治療を構成的に定式化し、AIにより制御可能とする理論体系。証明式、監視モデル、個別治療戦略を含みます

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julien-arino/julien-arino-old-website Fork of alshedivat/al-folio

Personal page of Julien Arino

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gualapuromoises/MoisesGualapuro

Moises curriculum, teaching experience and research interests.

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SimonHegele/Bioinformatics-Lecture-Notebooks

A collection of jupyter notbooks containing summaries and implementations of mathematical concepts and algorithms presented in various lectures on bioinformatics and related subjects

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pourion/pourion.github.io

Language: HTML - Size: 64.8 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

paololapo/CellCompetition-HybridCPM

Simulations of cell competition in ephitelia, using an hybrid Cellular Potts Model. 'Multiscale Mathematical Biology' course.

Language: Python - Size: 8.15 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

catohaste/neighbourhood-streak

Implementation of two models which study how positional information is encoded and interpreted in the developing embryo.

Language: Python - Size: 604 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

CZenkert/Turing-Pattern-Formation

lattice based model of stripe formation in zebra fish

Language: Jupyter Notebook - Size: 1.14 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

wsamyono/JarvisBulldogTeamFacHackGW23

This repository is for Jarvis Bulldog Team of FacutyHack@Gateways23 with SGX3.

Language: Jupyter Notebook - Size: 5.48 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Layton-Lab/nephron-calcium

Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.

Language: Python - Size: 714 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

abdouf/parasite-induced-shifts

The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.

Language: MATLAB - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

charlesrocabert/SigmaFGM

Individual-based implementation of Fisher's geometric model with evolvable phenotypic noise.

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Mathepia/MathepiaPrograms

Resources about projects on mathematical biology.

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shraddhapuntambekar/Mathematical-model-for-sumoylation

Mathematical model for sumoylation

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KarlJack47/HybridCAFieldCancerization

Hybrid Cellular Automata that represents field cancerization.

Language: C - Size: 7.5 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

KCGallagher/Schnakenberg_Sim

Basic Turing Pattern Model using the Schnakenberg System

Language: Python - Size: 401 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

arnold-c/SISMID_2021

Language: HTML - Size: 21.2 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1

PabRod/sleepR

Mechanistic models of sleep dynamics

Language: R - Size: 958 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

hakimbazol/iGEMITB2017

The codes of Drylab Team, iGEM ITB 2017 to support the wetlab.

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pknight24/random-fish-migration

COMAP 2020 Submission

Language: MATLAB - Size: 1.94 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

GaTechBrownLab/qsmodels 📦

Mathematical Models of Quorum Sensing

Language: Mathematica - Size: 112 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

aernesto/param-infer-clicks

code to infer model parameters from data (first dedicated to the dynamic clicks task)

Language: MATLAB - Size: 886 KB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

emmamcivor/matlab_FASEB_Calcium

Code to simulate local calcium dynamics in ER-PM junctions during store operated calcium entry. This MATLAB code was used to make the figures presented at FASEB Calcium and Cell Function, Lake Tahoe 2018

Language: MATLAB - Size: 557 KB - Last synced at: 8 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

DelSquared/Predator-Only-Lotka-Volterra-Model

Predator Only Lotka–Volterra Model

Language: Python - Size: 3.91 KB - Last synced at: about 2 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

yanastaneva8/travelling-waves

Solving a single species reaction-diffusion equation and the scaled Lotka-Volterra via travelling waves.

Language: Matlab - Size: 4.78 MB - Last synced at: about 2 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 2

yanastaneva8/age-structured-models

Using the Usher Matrix approach to analyze a sample population of the desert tortoise.

Language: Matlab - Size: 350 KB - Last synced at: about 2 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 1

stevengogogo/BEBI-5009-Mathematical-Biology

Language: Jupyter Notebook - Size: 8.59 MB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

igem-waterloo/uwaterloo-igem-2017

Software for the 2017 Waterloo iGEM Team

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scottfones/QBioPlots

A collection of classes that solve common quantitative biology problems and plot the results via plot.ly

Language: Python - Size: 141 KB - Last synced at: 2 days ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0

nsdumont/Spatial-Epidemics-Dynamics-and-Synchronization Fork of 4MB3-ModelStudents/Project

Final Project for a Mathematical Biology course

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