Topic: "sequence-assembly"
lh3/partig
An experimental tool to estimate the similarity between all pairs of contigs
Language: C - Size: 113 KB - Last synced at: about 1 month ago - Pushed at: about 4 years ago - Stars: 35 - Forks: 1
bcgsc/SSAKE
🍶 Genome assembly with short sequence reads
Language: Perl - Size: 28.5 MB - Last synced at: 22 days ago - Pushed at: over 1 year ago - Stars: 25 - Forks: 11
AuricFox/genomics
Repo dedicated to bioinformatics where genomic files are processed for sequence analysis, alignment, and more.
Language: Python - Size: 87.4 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
SimonHegele/Bioinformatics-Lecture-Notebooks
A collection of jupyter notbooks containing summaries and implementations of mathematical concepts and algorithms presented in various lectures on bioinformatics and related subjects
Language: Jupyter Notebook - Size: 5.22 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
JoshuaIszatt/Phanatic 📦
Configurable short read de novo assembly container using SPAdes and bbmap
Language: Python - Size: 155 KB - Last synced at: 10 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
jiadong324/ComparStra-Parser
Scripts used to compare SVs detected from long read and long read assembly
Language: Python - Size: 134 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
jungsoh/high-throughput-sequence-data-handling-course
Material used for a course on handling high-throughput genomic data handling, covering DNA sequence assembly, RNA-seq data analysis, metagenomics, and read alignment
Language: HTML - Size: 28.3 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
tombch/de-novo-assembler
(Not a serious assembler)
Language: Python - Size: 10.7 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
