Topic: "read-alignment"
at-cg/PanAligner
Long read aligner for cyclic and acyclic pangenome graphs
Language: C - Size: 3.79 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 33 - Forks: 4
CMU-SAFARI/GenASM
Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis" at https://people.inf.ethz.ch/omutlu/pub/GenASM-approximate-string-matching-framework-for-genome-analysis_micro20.pdf
Language: C - Size: 44.9 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 29 - Forks: 7
sanger-tol/readmapping
Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
Language: Nextflow - Size: 10.1 MB - Last synced at: 25 days ago - Pushed at: about 1 month ago - Stars: 13 - Forks: 6
jungsoh/high-throughput-sequence-data-handling-course
Material used for a course on handling high-throughput genomic data handling, covering DNA sequence assembly, RNA-seq data analysis, metagenomics, and read alignment
Language: HTML - Size: 28.3 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
