epiverse-trace/cfr

R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

Language: R - Size: 21 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 14 - Forks: 4

epiverse-trace/finalsize

R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

Language: R - Size: 11.2 MB - Last synced at: 10 days ago - Pushed at: 2 months ago - Stars: 10 - Forks: 7

epiverse-trace/epidemics

A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

Language: R - Size: 20.1 MB - Last synced at: 10 days ago - Pushed at: 13 days ago - Stars: 8 - Forks: 5

epiforecasts/bpmodels

[RETIRED. Use the epichains package instead]. Methods for simulating and analysing the sizes and lengths of chains from branching process models

Language: R - Size: 5.42 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 7 - Forks: 7

pitmonticone/EpiSimulator

EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.

Language: Jupyter Notebook - Size: 513 MB - Last synced at: 16 days ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 1

epiverse-trace/epichains

Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

Language: R - Size: 9.88 MB - Last synced at: 9 days ago - Pushed at: 14 days ago - Stars: 6 - Forks: 2

JBris/sir-agent-based-modelling

Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.

Language: Jupyter Notebook - Size: 10.5 MB - Last synced at: 13 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0

Bigscity-epidemic/Epidemic-Modeling-survey

Language: Python - Size: 173 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 2

HySonLab/pandemic_tgnn

Predicting COVID-19 pandemic by spatio-temporal graph neural networks https://arxiv.org/abs/2305.07731

Language: Python - Size: 2.12 MB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 2

epiverse-trace/tutorials

Language: R - Size: 20.1 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 3 - Forks: 4

americocunhajr/D-FENSE

D-FENSE is a repository for dengue data in Brazil, enabling predictive modeling, visualization, and public health support.

Language: MATLAB - Size: 156 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 1 - Forks: 0

Kai-Ref/DeepAR_InfluenzaForecast

DeepAR implementation for seasonal influenza cases in German districts

Language: Jupyter Notebook - Size: 207 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

bryce-carson/ehpi

A Basic Compartmental Epidemic Modelling API

Language: R - Size: 620 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

uros-bojanic/epidemic-modelling

[Computer Modeling] SIR/SIRS/SIRQ/ISIR/SEIR compartmental models for numerical epidemic modelling in MATLAB.

Language: MATLAB - Size: 897 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

shussin245/Epidemic-Modeling

Created an R Shiny App is an interactive tool that simulates disease spread using SI, SIS, and SIR models, allowing users to explore how transmission and recovery rates impact epidemics over time.

Language: R - Size: 3.91 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

R-N/prediksicovidjatim-core Fork of prediksicovidjatim/prediksicovidjatim-core

The core library of prediksicovidjatim

Language: Python - Size: 94.7 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

giopedro92/seird-model-exam

SEIRD model project for the Programmazione per la fisica exam.

Language: C++ - Size: 73.2 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

yanncauchepin/EpidemicDigitalization

Language: TeX - Size: 36.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

epiverse-trace/scenarios

[SUSPENDED]: R package to compare epidemic scenario model outcomes.

Language: R - Size: 4.61 MB - Last synced at: 28 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

Pastells/covid_models

Collection of epidemic models. Includes ODEs, stochastic and complex networks, with non-markovian distributions (Erlang type).

Language: Python - Size: 77.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

andreehrlich/covid_mcmc_change_point_detection

Epidemic Models. Bayesian Estimation (MCMC) of Change-Points in COVID-19 Reported Cases in 3 European Countries

Size: 7.94 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

R-N/prediksicovidjatim-worker Fork of prediksicovidjatim/prediksicovidjatim-worker

Worker of prediksicovidjatim

Language: Jupyter Notebook - Size: 256 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

R-N/prediksicovidjatim-map Fork of prediksicovidjatim/prediksicovidjatim-map

The map of prediksicovidjatim, built with Arcgis Wep Appbuilder Developer Edition.

Language: JavaScript - Size: 8.46 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

leo-pfeiffer/epi-sim

Repository for my MSc Thesis `A Web Application for Compartmental Network Models Illustrated Using COVID-19'

Language: Python - Size: 29.8 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

anapdinizm/epidemic-simulator Fork of LucaDiba/epidemic-simulator

A HTML/JavaScript simulator for an epidemc on a population

Language: JavaScript - Size: 944 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0