Topic: "bioinformatics-workflow"
icaromsc/WGCA
JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes
Language: Python - Size: 629 MB - Last synced at: 21 days ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 2
allytrope/variant-analysis
A Snakemake pipeline for variant calling of genomic FASTQ data using GATK
Language: Jupyter Notebook - Size: 4.39 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 5 - Forks: 0
KenSaville/Variant-Caller
A Latch Bio workflow to call DNA sequence variants
Language: Python - Size: 6.84 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
oicr-gsi/sarsCoV2Analysis
Classify samples as being either SARS-CoV-2 positive or negative, identify the strain of virus, and produce statistics about the mapping.
Language: WDL - Size: 183 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
ruppinlab/tcga-wgs-kraken-microbial-quant
Kraken2 + Bracken based pipeline for classifying and quantifying microbial reads from GDC TCGA WGS data
Language: Python - Size: 21.7 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1
mrmrwinter/isoseq_processing
A snakemake workflow to automate the IsoSeq3 pipeline from Pacific Biosciences
Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
