Topic: "chromatin-loops"
YaqiangCao/cLoops
Accurate and flexible loops calling tool for 3D genomic data.
Language: Python - Size: 464 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 103 - Forks: 48
ay-lab/mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
Language: Python - Size: 8.76 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 71 - Forks: 12
koszullab/chromosight
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Language: Python - Size: 54.6 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 63 - Forks: 9
aleskunder/topology_loop_caller
Chromatin loop caller using Topological Data Analysis based on Hi-C data
Language: Python - Size: 625 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1
sa501428/clear-tools
Chromatin Landscape Exploration, Analysis, and Research Tools
Language: Java - Size: 80.9 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 2
yufanzhouonline/HiSIF
HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops
Language: C++ - Size: 140 MB - Last synced at: 2 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
FAhtisham/DCNN-YY1
The repository contains the codes for the prediction of YY1 chromatin loops using densely connected neural network based on Kmer embeddings.
Language: Jupyter Notebook - Size: 151 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
