Noble-Lab/HiCFoundation

HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

Language: Python - Size: 42.9 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 17 - Forks: 3

ZhangGroup-MITChemistry/DRAGON

Language: Python - Size: 86.1 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 9 - Forks: 1

jumphone/InferLoop

InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop

Language: R - Size: 5.39 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 0

batxes/4Cin

3D chromatin modeler using 4C-seq data

Language: Python - Size: 205 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 3 - Forks: 0

koustav-pal/HiCBricks

HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.

Language: R - Size: 10.3 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 4

kevinbdsouza/Hi-C-LSTM

Hi-C-LSTM is a framework to form Hi-C representations that are useful for tasks such as element identification and in-silico modification.

Language: Python - Size: 218 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

sa501428/clear-tools

Chromatin Landscape Exploration, Analysis, and Research Tools

Language: Java - Size: 80.9 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 2 - Forks: 2

yufanzhouonline/HiSIF

HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops

Language: C++ - Size: 140 MB - Last synced at: 5 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

batxes/Irastorza-Azcarate_Kukalev_Kempfer_2024

Code used to plot the figures in "Extensive folding variability between homologous chromosomes in mammalian cells"

Language: Python - Size: 5.76 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0