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GitHub / koustav-pal / HiCBricks
HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/koustav-pal%2FHiCBricks
Stars: 3
Forks: 4
Open Issues: 12
License: other
Language: R
Repo Size: 10.3 MB
Dependencies:
29
Created: over 5 years ago
Updated: 7 months ago
Last pushed: 9 months ago
Last synced: 7 months ago
Topics: bioconductor-package, bioconductor-packages, chromatin-organisation, chromatin-structure, genome-sequencing, hdf5, hi-c
Files
Dependencies
- R >= 3.6 depends
- R6 * depends
- curl * depends
- grid * depends
- rhdf5 * depends
- utils * depends
- BiocParallel * imports
- GenomeInfoDb * imports
- GenomicRanges * imports
- IRanges * imports
- R.utils * imports
- RColorBrewer * imports
- S4Vectors * imports
- data.table * imports
- digest * imports
- ggplot2 * imports
- grDevices * imports
- jsonlite * imports
- methods * imports
- readr * imports
- reshape2 * imports
- scales * imports
- stats * imports
- stringr * imports
- tibble * imports
- viridis * imports
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests