Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: chromatin-structure
batxes/Irastorza-Azcarate_Kukalev_Kempfer_2024
Code used to plot the figures in "Extensive folding variability between homologous chromosomes in mammalian cells"
Language: Python - Size: 5.72 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 0 - Forks: 0
sa501428/clear-tools
Chromatin Landscape Exploration, Analysis, and Research Tools
Language: Java - Size: 80 MB - Last synced: 21 days ago - Pushed: 22 days ago - Stars: 2 - Forks: 1
koustav-pal/HiCBricks
HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.
Language: R - Size: 10.3 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 3 - Forks: 4
yufanzhouonline/HiSIF
HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops
Language: C++ - Size: 140 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
ZhangGroup-MITChemistry/DRAGON
Language: Python - Size: 86.1 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 9 - Forks: 1
jumphone/InferLoop
InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop
Language: R - Size: 5.39 MB - Last synced: almost 1 year ago - Pushed: almost 1 year ago - Stars: 2 - Forks: 0
kevinbdsouza/Hi-C-LSTM
Hi-C-LSTM is a framework to form Hi-C representations that are useful for tasks such as element identification and in-silico modification.
Language: Python - Size: 218 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0