genomics-visualization | Topic | Ecosyste.ms: Repos

Topic: "genomics-visualization"

alexpreynolds/tabix-service

A nodejs-based service for requests for tabix-indexed genomic data

Language: JavaScript - Size: 124 KB - Last synced at: 15 days ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 4

mb1511/GenomeWeb

Python package to create line drawings of genomic comparison 'webs'/'hive plots'

Language: Python - Size: 6.19 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0

romagnolid/combact 📦

Pipeline to highlight genomic mutations in bacterial genomes

Language: Python - Size: 105 KB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0

nschan/syri_gggenomes

Plot SyRi output via gggenomes

Language: R - Size: 5.69 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 1 - Forks: 0

satoshikawato/gbdraw

A genome diagram generator for microbes

Language: Python - Size: 83.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

VizCNV is an interactive tool designed to analyze and visualize CNVs from short read WGS data in rare disease research. Built on R Studio Shiny, it streamlines the identification of complex genomic rearrangements and facilitates advancements in understanding and diagnosing rare genetic conditions.

Language: R - Size: 125 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 2

sscansan/genomics_and_GWAS_tutorials

Analysis of SNP variants, derived from chip array genotyping and HTS sequencing

Language: HTML - Size: 26.6 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

Sarah-Hesham-2022/De-Bruijn-Graph-for-Genome-Assembly

Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.

Language: Python - Size: 230 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

thierrygosselin/gotedna

Guidance on optimal eDNA sampling periods to develop, optimize and interpret monitoring programs

Language: R - Size: 860 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

YogiOnBioinformatics/Maternal-to-Zygotic-Transition-in-Xenopus-laevis

Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis

Language: Shell - Size: 1.9 MB - Last synced at: 12 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

The1stMartian/GCskewAnalyzer

Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.

Language: Python - Size: 2.39 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

Mithilesh1609/Unwrapping-the-COVID-19-genome

This is a python implementation of understanding the genome of covid-19 and compare it with previously well known disease's genome

Language: Jupyter Notebook - Size: 611 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

sooraj14072001/TEAM-GENOMICS_ONE

Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!

Size: 2.56 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

Robaina/Clinker_Server

Set clinker to be run remotely from a server

Language: PHP - Size: 894 KB - Last synced at: 1 day ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

zhuochenbioinfo/ggomics

Visualization tools for genomics analysis based on ggplot2

Language: R - Size: 6.84 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

agouy/vole_genome_analysis

Material for the analysis of Microtus whole genomes

Language: R - Size: 130 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 2

gbwiersum/NUDataSciSummer2020

This is a project for Northwestern's CIS395 course in DataScience. This project implements a pipeline to determine genetic distance between all coronavirus genomes contained in the NIH Coronavirus dataset.

Language: Jupyter Notebook - Size: 11.8 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

nlawlor/Multiomic_Browser

An R shiny application for visualization of EndoC-bH1 and human islet genomic data

Language: R - Size: 18 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

snesic/manhattan-plot-eQTLs-per-gene

Language: R - Size: 4.58 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2

cidm-ph/phylepic

Epidemic curve + phylogenomic tree

Language: R - Size: 15.9 MB - Last synced at: 14 days ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

grigsbyanthony/IW-CGA

A comparative genomic analysis of several Ignatzschineriaceae spp.

Language: R - Size: 3.71 MB - Last synced at: 5 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

Zhenglabhku/WormSynteny

Visualize the synteny or genomic conservation among eleven nematode Caenorhabditis species.

Language: R - Size: 87.1 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

johnvusich/johnvusich.github.io

My personal website

Language: HTML - Size: 1.35 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Ahmedyassin300/Mendelian-Genetics-Algorithm

Mendelian Genetics Algorithm

Language: Python - Size: 4.88 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

vaishnavipaithane/Genomic-Data-and-Management-Analysis

This miniproject is part of 'Fundamentals of Python Programming' virtual internship conducted by Nyberman Bioinformatics, Europe.

Language: Python - Size: 22.5 KB - Last synced at: about 2 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

ikergarcia1996/Gene2Tab

This script is used to convert the output of ABRICATE tabulated output into a matrix samples with the genes as columns and the presence/absence of the gene as the values.

Language: Python - Size: 28.3 KB - Last synced at: 18 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

daormar/flux-capacitor

Flux Capacitor toolkit for systems biology

Language: Python - Size: 85.1 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

janschneida/Clinical-SimSpace-Explorer

Tool for EHR & mutation profile based patient clustering & visualization, developed in partial fulfillment of the requirements for the course “Medical Informatics” at the University Medical Center Göttingen.

Language: Python - Size: 18.1 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

jkissing/jcklab-public

Kissinger Research Group Shared Code

Size: 1000 Bytes - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

OrangePomeranian/genomics_project

Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees

Size: 32.4 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

hsaxe/Plotting-Analysis

R shiny web application for visualizing omics data

Language: R - Size: 942 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

hmmartiny/Microbesoft

Language: C - Size: 7.6 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

Sahar-DataScience/Antibiotic-Resistance-Detector

The challenge is to build a classifier that can detect ARGs. Using genetic sequences as input, the classifier should be able to identify if a gene is antibiotic resistant or not.

Language: Jupyter Notebook - Size: 2.07 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

ovsama/Genomic_Data_Science

Here is a whole bunch of genomic data analyses using Bioconductor packages. The files are found in the form of .R files.

Language: R - Size: 178 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

ghattab/CAPT

Context-Aware Phylogenetic Trees for Phylogeny-based Taxonomy Visualization

Language: JavaScript - Size: 6.57 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

MaryAgopian/Variant_Barcoding_M.orygis

Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.

Language: R - Size: 55.7 KB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

ManinderpreetPuri/Artificial-Intelligence-In-Bioinformatics-P3

Size: 11.1 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

ManinderpreetPuri/Artificial-Intelligence-In-Bioinfromatics-Project1

Computer Science and Information Technology Professionals are being employed in many diverse areas of Science. In this project are focusing on Bioinformatics and the knowledge and skills to understand and participate in this field of research or as an advance step to greater employment opportunities. This project will clarify the fundamentals of Bioinformatics from the end user perspective and will allow us to participate in information gathering.

Size: 1.78 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

intermine/humanmine

HumanMine - an InterMine with human genomic data

Language: Perl - Size: 534 KB - Last synced at: 24 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 5

HMLueken/DNATagger

Windows Forms application for visualizing DNA Sequnces and adding notes to them

Language: C# - Size: 106 KB - Last synced at: 15 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

tare/raesymatto

Raesymatto: visualize genomic data

Language: Jupyter Notebook - Size: 85 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

stefanusbernard/Biopython-Genomics-Analysis

Repository codes for genomics analysis using biopython module. Originally created by S. Bernard & M. Aldino for the final project of Genomics course.

Language: Python - Size: 741 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

chrisgulvik/sars-cov-2-genomic-dashboards Fork of ells/testWikiFunctionality

genomic dashboards for visualizing SARS-CoV-2 genomic analyses

Size: 5.63 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

The1stMartian/Rshiny_App_GCskew

R-Shiny App displaying the GC Skew of bacterial genomes

Language: HTML - Size: 3.09 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

chasesmith15/Potamilus_EE

Data for Smith et al. 2021 in Ecology and Evolution

Language: R - Size: 7.69 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

kaymers/MetaG

MetaG is a comprehensive metagenomic visualization tool. MetaG displays lower dimensional representations of high throughput metagenomic sequence reads using deep-learning techniques. MetaG will provide additional taxonomic details of the composition of a given metagenome using its pipeline based on BLAST.

Language: Python - Size: 11.1 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1