Topic: "orthologs"
davidemms/OrthoFinder
Phylogenetic orthology inference for comparative genomics
Language: Python - Size: 51.3 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 783 - Forks: 193
BIONF/PhyloProfile
A phylogenetic profile analysis tool
Language: R - Size: 2.49 MB - Last synced at: 13 days ago - Pushed at: 14 days ago - Stars: 35 - Forks: 11
datasnakes/OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Language: Python - Size: 40.6 MB - Last synced at: 28 days ago - Pushed at: about 1 month ago - Stars: 28 - Forks: 4
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Language: Python - Size: 78.1 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 27 - Forks: 6
Rinoahu/SwiftOrtho
A high performance tool to identify orthologs and paralogs across genomes.
Language: Python - Size: 20.1 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 22 - Forks: 12
glarue/reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Language: Python - Size: 90.8 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 11 - Forks: 4
BIONF/fDOG
Feature-aware Directed OrtholoG search
Language: Python - Size: 28.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 4
wrf/supermatrix
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Language: Python - Size: 41.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 3
ohdongha/OrthNet
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
Language: Python - Size: 176 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 7 - Forks: 3
tseemann/noary
🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool
Language: Perl - Size: 23.4 KB - Last synced at: 3 months ago - Pushed at: almost 6 years ago - Stars: 7 - Forks: 2
pwilmart/annotations
GUI tool to add rich annotations to PAW summary files from Swiss-Prot flat text files.
Language: Python - Size: 24.1 MB - Last synced at: 4 months ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 1
dmitrymyl/ortho2align
ortho2align is a lncRNA ortholog discovery CLI tool based on syntenic regions and statistical assessment of alignment nonrandomness.
Language: Python - Size: 9.83 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 1
RhettRautsaw/PhyProbe
PhyProbe is a bioinformatic pipeline designed to extract phylogenetic loci from Next-Generation Sequencing datasets including RNAseq, WGS, and Sequence/Target Capture methodologies (e.g., AHE, UCEs).
Language: Python - Size: 890 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
TheJacksonLaboratory/geneweaver-aon
Ortholog/homolog mapping for Geneweaver
Language: Python - Size: 16.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
pegi3s/two-way-blast
A Compi pipeline for finding orthologs using a two-way BLAST approach.
Language: Dockerfile - Size: 302 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
mr-eyes/orthodb-refseq-mapper
Mapping RefSeq RNA to OrthoDB (Under Development)
Language: Python - Size: 1.99 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
roblehmann/marineHeatwave
Supplementay Material for publication "Species-specific molecular responses of wild coral reef fishes during a marine heatwave"
Size: 563 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
travis-m-blimkie/getPASequences
Submit PA locus tags and download annotations or sequences, and map to other strains
Language: CSS - Size: 27.5 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
PriyaLakr/coreGenomePhylogeny
Script to design core genome phylogeny using bacterial genome assemblies
Language: Shell - Size: 64.5 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1
brettwhitty/bw-msu-tools
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Language: Perl - Size: 3.76 MB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
lrgr/homologene
A small pipeline to extract homologs from Homologene
Language: Python - Size: 7.81 KB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 1
spencer-hs/PanInteractome
Scripts used to help facilitate the construction of a binary protein interaction network
Language: Python - Size: 3.91 KB - Last synced at: 5 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
