Topic: "genomic-data-science"
BioInterchange/Ontologies
Home of the Genomic Feature and Variation Ontology (GFVO)
Language: Ruby - Size: 738 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 16 - Forks: 4
TheJacksonLaboratory/geneweaver-api
A system for the integration and analysis of heterogeneous functional genomics data.
Language: Python - Size: 1.36 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 6 - Forks: 0
TheJacksonLaboratory/geneweaver-docs
Documentation site for the Geneweaver project.
Size: 23.6 MB - Last synced at: 9 days ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0
TheJacksonLaboratory/geneweaver-db
The GeneWeaver database interaction code.
Language: Python - Size: 413 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0
TheJacksonLaboratory/geneweaver-core
The core library for GeneWeaver projects.
Language: Python - Size: 364 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0
HuntsmanCancerInstitute/GQuery
GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, differentially expressed genes, epigenetic marks, anything that can be associated with genomic coordinates. Just point the GQuery indexer at a collection of tabix indexed files and then run either the GQuery command line app or the web API to search them. GQuery is built using a fast, multi-threaded, genomic range search engine with extensive junit testing.
Language: C - Size: 4.69 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
vy-phung/genomic-data-science-project-about-fetus-and-adult
My personal genomic data science project
Language: Jupyter Notebook - Size: 15.8 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
overture-stack/website
Overture.bio website, based on Gatsby static site generator
Language: JavaScript - Size: 62.3 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 1 - Forks: 2
BesenbacherLab/kmerPaPa
Tool to calculate a "k-mer pattern partition" from position specific k-mer counts.
Language: Python - Size: 438 KB - Last synced at: about 24 hours ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
TheJacksonLaboratory/geneweaver-aon
Ortholog/homolog mapping for Geneweaver
Language: Python - Size: 16.5 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
SrinivasSubra/GETS
GETS: a Genomic Tree based Sparse solver. This package accompanies an article to be published in the forthcoming Birkhäuser-ANHA book "Explorations in the Mathematics of Data Science" --- "A genomic tree based sparse solver" by Timothy A. Davis and Srinivas Subramanian.
Language: C - Size: 5.93 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
anmolmore/Enzyme-Classifier-Using-ML
Classify enzymes with geomic sequence using spark-ML
Language: Jupyter Notebook - Size: 719 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
ijazali678/2--Python-for-Genomic-Data-Science
The GitHub repository for genomic data science is a collection of resources, tools, and code snippets for analyzing and interpreting genomic data.
Language: Jupyter Notebook - Size: 21.6 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
chiraltraining/GDS
Introduction to Genomic Data Science with R
Language: HTML - Size: 209 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
MaryAgopian/Variant_Barcoding_M.orygis
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
Language: R - Size: 55.7 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
chiralbd/ISCB20.08
Python for Bioinformatics
Language: Jupyter Notebook - Size: 5.42 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1
chiraltraining/HDS
Study plan for learning Health Data Science(HDS)
Size: 9.77 KB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1
hossainlab/SeqData
Sequencing Data Analysis
Language: Jupyter Notebook - Size: 3.46 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1
hossainlab/MutationalPatterns
Mutational Signatue Analysis using R
Language: R - Size: 13.2 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0