Topic: "protein-protein-interactions"
DeepRank/Deeprank-GNN 📦
Graph Network for protein-protein interface
Language: Python - Size: 96 MB - Last synced at: 16 days ago - Pushed at: over 1 year ago - Stars: 120 - Forks: 33
BioinfoMachineLearning/DeepInteract
A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)
Language: Python - Size: 3 MB - Last synced at: 18 days ago - Pushed at: about 3 years ago - Stars: 64 - Forks: 11
anton-bushuiev/PPIformer
Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
Language: Jupyter Notebook - Size: 2.16 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 47 - Forks: 4
Bhattacharya-Lab/EquiPPIS
E(3) equivariant graph neural network for PPI site prediction
Language: Python - Size: 34.5 MB - Last synced at: 8 months ago - Pushed at: almost 2 years ago - Stars: 9 - Forks: 2
walterlab-HMS/SPOC
Code repository for the SPOC tool for scoring binary AF-M predicitons.
Language: Perl - Size: 237 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 7 - Forks: 2
marcottelab/super.complex_website_humap
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 by Super.Complex and CORUM
Language: HTML - Size: 2.75 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 1
AspirinCode/QEPPI-community Fork of ohuelab/QEPPI
Community-Maintained Version of mordred (Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions)
Language: Jupyter Notebook - Size: 4.35 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
neksa/interactome
Structural Interactome pipeline
Language: JavaScript - Size: 68.2 MB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0
Emad-COMBINE-lab/intrepppid
Incorporating Triplet Error for Predicting PPIs using Deep Learning
Language: Python - Size: 288 KB - Last synced at: 17 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
Emad-COMBINE-lab/ppi_origami
Tools for processing and analysing PPI datasets
Language: Python - Size: 419 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Ilia-Abolhasani/co-worker-proteins-in-gene-ontology
Analyzing biological networks using statistical testing to uncover significant differences in protein distributions based on functional relationships.
Language: Jupyter Notebook - Size: 209 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
marcottelab/RL_humap_prediction Fork of ridhipatil/RL_website
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 with RL
Language: HTML - Size: 18.5 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1
bio2bel/hippie
Convert PPIs in HIPPIE to BEL
Language: Python - Size: 55.7 KB - Last synced at: about 1 month ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
