Topic: "structural-variations"
fritzsedlazeck/Sniffles
Structural variation caller using third generation sequencing
Language: Python - Size: 12.4 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 596 - Forks: 96
Illumina/manta 📦
Structural variant and indel caller for mapped sequencing data
Language: C++ - Size: 113 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 423 - Forks: 152
fritzsedlazeck/SURVIVOR
Toolset for SV simulation, comparison and filtering
Language: C++ - Size: 20.1 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 379 - Forks: 48
philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Language: C++ - Size: 35.4 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 303 - Forks: 40
walaj/svaba
Structural variation and indel detection by local assembly
Language: C++ - Size: 4.01 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 246 - Forks: 46
starskyzheng/panpop
Application of pan-genome for population
Language: Perl - Size: 62 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 93 - Forks: 8
czc/nb_distribution
novoBreak: local assembly for breakpoint detection in cancer genomes
Language: Perl - Size: 3.21 MB - Last synced at: 11 months ago - Pushed at: about 7 years ago - Stars: 26 - Forks: 6
pk7zuva/Circle_finder
Micro DNA identification
Language: Shell - Size: 101 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 20 - Forks: 14
fritzsedlazeck/SURVIVOR_ant
A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
Language: HTML - Size: 5.47 MB - Last synced at: 5 months ago - Pushed at: over 7 years ago - Stars: 13 - Forks: 2
micahvista/MAMnet
MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
Language: Python - Size: 10.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 1
coopsor/SVPG
Pangenome-based structural variation caller
Language: Python - Size: 36.1 KB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 5 - Forks: 0
jasonwong-lab/smk_sv
A snakemake pipeline to call structure variants from ONT data
Language: Python - Size: 4.33 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 2 - Forks: 0
vborjesson/SVenX
Pipeline for SV detection using 10X genomics data
Language: Python - Size: 673 KB - Last synced at: 12 months ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 2
meiers/thesis
PhD thesis
Language: TeX - Size: 46.5 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0
