toxicology | Topic | Ecosyste.ms: Repos

Topic: "toxicology"

cthoyt/chembl-downloader

Write reproducible code for getting and processing ChEMBL

Language: Jupyter Notebook - Size: 1.01 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 77 - Forks: 14

shapiromatron/hawc

Health Assessment Workspace Collaborative, a content management system for systematic reviews

Language: Python - Size: 102 MB - Last synced at: 6 days ago - Pushed at: 14 days ago - Stars: 20 - Forks: 16

enanomapper/ontologies

The eNanoMapper ontology

Language: Python - Size: 117 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 19 - Forks: 15

open-AIMS/bayesnec

Bayesian No-Effect-Concentration estimation in R

Language: R - Size: 759 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 13 - Forks: 7

ToxPi/toxpiR

toxpiR R package for the Toxicological Priority Index (ToxPi) algorithm.

Language: R - Size: 14.2 MB - Last synced at: 6 days ago - Pushed at: 2 months ago - Stars: 11 - Forks: 4

asancpt/caffsim

R package for simulation of caffeine concentration <doi:10.12793/tcp.2017.25.3.141>. https://asancpt.github.io/caffsim

Language: R - Size: 74.5 MB - Last synced at: 13 days ago - Pushed at: almost 5 years ago - Stars: 10 - Forks: 1

phuse-org/toxSummary

R Shiny App to Visualize and Summarize Repeat-Dose Toxicology Study Results

Language: R - Size: 13.2 MB - Last synced at: 9 days ago - Pushed at: 10 months ago - Stars: 9 - Forks: 3

InSilicoVida-Research-Lab/AOPWiki_Explorer

A query engine to retrive information from AOP wiki graph database.

Language: Jupyter Notebook - Size: 43.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 3

CIRAIG/IWP_Reborn

The rebirth of IMPACT World+ in a fully automated and transparent fashion.

Language: Python - Size: 92.6 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 7 - Forks: 0

USEPA/hawc

Captures key data for health assessment of chemicals and other environmental hazards

Language: Python - Size: 101 MB - Last synced at: 19 days ago - Pushed at: 6 months ago - Stars: 6 - Forks: 3

i-shah/ml-organ-tox

Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data

Language: Jupyter Notebook - Size: 12.7 MB - Last synced at: almost 2 years ago - Pushed at: over 8 years ago - Stars: 6 - Forks: 9

Yousuf28/Awesome-SEND

links related to SEND/Nonclinical toxicology

Language: HTML - Size: 5.06 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 5 - Forks: 0

barupal/exposome

The Blood Exposome Database

Language: R - Size: 144 KB - Last synced at: about 2 months ago - Pushed at: almost 5 years ago - Stars: 5 - Forks: 4

evanfloden/nf-toxomix

OpenRiskNet pipeline for TGX case study: toxicology predictions based on transcriptomic profiles

Language: Groovy - Size: 6 MB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 5 - Forks: 1

This Python project uses neural networks and genetic algorithms to design bioinsecticide compounds targeting specific proteins. By leveraging IC50 values from FASTA sequences, it generates and optimizes SMILES representations, enhancing the efficacy and specificity of bioinsecticides.

Language: Python - Size: 1.09 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 4 - Forks: 0

USEPA/BMDS

U.S EPA Benchmark Dose Modeling Software (BMDS)

Language: C++ - Size: 571 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 4

USEPA/BMDS-UI

U.S. EPA Benchmark Dose Modeling Software User Interface (BMDS Desktop and BMDS Online)

Language: CSS - Size: 5.17 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 2

andresilvapimentel/SARAlerts

SARAlerts is a code to generate structural alerts (toxic alerts) using Local Interpretable Model-Agnostic Explanations (LIME) of machine learning models from Tox21, Clintox, and Sider datasets.

Language: Jupyter Notebook - Size: 4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

benjaminhlina/ecotox

Analysis of Ecotoxicology

Language: R - Size: 6.94 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 1

elixir-europe/toxicology-community

Repository to coordinate the work of the Toxicology Community.

Size: 1.08 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 16

akokai/commongroups

Molecular structure-based classification of chemicals in known hazard groups

Language: Python - Size: 251 KB - Last synced at: 2 days ago - Pushed at: about 8 years ago - Stars: 3 - Forks: 0

bioclipse/bioclipse.opentox

OpenTox functionality for Bioclipse.

Language: Java - Size: 1.18 MB - Last synced at: over 1 year ago - Pushed at: over 8 years ago - Stars: 3 - Forks: 4

StyrbjornKall/TRIDENT_application

Source code for the web application associated with "Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms".

Language: Python - Size: 867 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

cthoyt/cthoyt.github.io

My personal website, served at https://cthoyt.com

Language: HTML - Size: 41.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 4

Mr-Mathias-F/pydrc

A Python module for analysis and visualization of dose-response data

Language: Python - Size: 537 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 1

andresilvapimentel/bbbp-explainer

BBBP Explainer is a code to generate structural alerts of blood-brain barrier penetrating and non-penetrating drugs using Local Interpretable Model-Agnostic Explanations (LIME) of machine learning models from BBBP dataset.

Language: Jupyter Notebook - Size: 18.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

open-prophetdb/biomedgps-studio

[Frontend] A knowledge graph system with graph neural network for drug discovery, disease mechanism and biomarker screening.

Language: TypeScript - Size: 62.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

EskelandLab/ANDA

ANDA: An open-source tool for automated image analysis of in vitro neuronal cells

Language: Python - Size: 253 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1

ideaconsult/ambit-docker

Run the AMBIT services on Docker

Language: Shell - Size: 95.7 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

shapiromatron/tblBuilder 📦

A meteor-based table-building application for epidemiology, and mechanistic data used in the human-health assessment of chemicals.

Language: JavaScript - Size: 2.44 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 2

i-shah/livertox-crt-2015

Data and code for rodent hepatotoxicity prediction

Language: Jupyter Notebook - Size: 658 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1

biobricks-ai/adrecs

An adverse drug reaction (ADR) is described by the World Health Organization (WHO) as a 'response to a medicine which is noxious and unintended, and which occurs at doses normally used in man

Language: Dockerfile - Size: 20.5 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

yjcyxky/rapex

RAPEX - Response to Air Pollution EXposure

Language: Clojure - Size: 62.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

ontox-project/xploreaop

The public version of the 'XploreAOP' Shiny application to interactively visualize AOP Networks

Language: HTML - Size: 1.07 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

eurotox-2023-aitox-cec/course-materials

workshop materials for "A hands-on introduction to applied artificial intelligence in toxicology"

Language: Jupyter Notebook - Size: 37.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2

ideaconsult/toxtree-mirror

GitHub read-only mirror of Toxtree

Language: Java - Size: 43.4 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

jclopeztavera/genotoxic-micronuclei

R scripts and data used to produce the "Genotoxic Evaluation of Mexican Welders Occupationally Exposed to Welding-Fumes Using the Micronucleus Test on Exfoliated Oral Mucosa Cells: A Case-Control Study" paper

Language: R - Size: 30.3 KB - Last synced at: about 2 years ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 0

VHP4Safety/AOP-app

AOP Network Builder

Language: JavaScript - Size: 11.8 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0

alexisbourdais/MetaTox

A combination of 5 in silico metabolite prediction tools. Developed for toxicological studies, but applicable to other fields.

Language: Shell - Size: 571 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

gautampk95/drm_python

A Python library for building, summarizing, and fitting dose-response models

Size: 2.93 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

ideaconsult/orange3-toxfairy

Python library and Orange3 widget for high-throughput screening data preprocessing, toxicity scoring, and FAIRification

Language: Python - Size: 1.03 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

elijahedmondson/Tox-path

A collection of R scripts to analyze toxicologic path data

Language: R - Size: 133 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

andresilvapimentel/endocrine-disruption-explainer

Endocrine Disruption Explainer is a code to generate structural alerts of endocrine disruption of chemcial compounds using Local Interpretable Model-Agnostic Explanations (LIME) of machine learning models from TOX-21, EDC, and EDKB-FDA datasets.

Language: Jupyter Notebook - Size: 9.49 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

TharpAllison/CDC-NIOSH

A collection of projects from my experience as a Biostatistics/Bioinformatics fellow at NIOSH in Cincinnati, Ohio.

Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

andresilvapimentel/mutagen-explainer

Mutagen Explainer is a code to generate structural alerts of mutagenicity of chemcial compounds using Local Interpretable Model-Agnostic Explanations (LIME) of machine learning models from Bursi and Hansen Ames mutagenicity datasets.

Language: Jupyter Notebook - Size: 16.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

KevSchmitz/proyectoCoder

Proyecto de Web Design para promoción de cursos de farmacia

Language: HTML - Size: 429 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

innovamol/PaCCO

Preclinical and Clinical Concept Ontology (PaCCO)

Size: 17.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ontox-hu/aira Fork of UNCSRP/Data-Analysis-Training-Modules

The workshop materials for the Workshop on ‘Applications for artificial intelligence (AI) in risk assessment’ (AiRA) - Sitges, 25 November 2022

Language: CSS - Size: 38 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0