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Topic: "umi-count-matrix"

berenslab/umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

Language: Jupyter Notebook - Size: 89.2 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 37 - Forks: 2

yanailab/celseq2

Generate the UMI count matrix from CEL-Seq2 sequencing data

Language: Python - Size: 1.34 MB - Last synced at: 5 days ago - Pushed at: over 6 years ago - Stars: 20 - Forks: 13

Related Topics
single-cell-rna-seq 2 dimensionality-reduction 1 gene-selection 1 glm-pca 1 negative-binomial 1 negative-binomial-model 1 negative-binomial-regression 1 normalization 1 scrna 1 single-cell-analysis 1 t-sne 1 umi-count 1 bioinformatics-pipeline 1 cel-seq2 1 snakemake 1 spatial-transcriptomics 1