cafferychen777/mLLMCelltype

An iterative multi-LLM consensus framework for accurate cell type annotation in single-cell RNA-seq data

Language: Python - Size: 58.1 MB - Last synced at: 5 days ago - Pushed at: 11 days ago - Stars: 520 - Forks: 47

fanglu0411/sgs

SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.

Language: JavaScript - Size: 27.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 91 - Forks: 19

genome/bfx-workshop

A course on genomics and bioinformatics from WU

Language: HTML - Size: 406 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 68 - Forks: 25

berenslab/umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

Language: Jupyter Notebook - Size: 89.2 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 37 - Forks: 2

ucdavis-bioinformatics-training/2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

Language: HTML - Size: 90 MB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 33 - Forks: 13

klarman-cell-observatory/scPlot

Single cell interactive plotting tools

Language: Jupyter Notebook - Size: 37.9 MB - Last synced at: 29 days ago - Pushed at: almost 5 years ago - Stars: 23 - Forks: 8

ylaboratory/seismic

Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data

Language: R - Size: 45.8 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 15 - Forks: 4

raevskymichail/epi-impute

Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data

Language: R - Size: 56.3 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 3

bixBeta/TReX

RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex

Language: Shell - Size: 1.06 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1

rnabioco/scRNA-seq-Cell-Ref-Matrix

A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans

Language: R - Size: 338 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 1

ucdavis-bioinformatics-training/So-you-want-to-do-a-Single-Cell-RNA-seq-experiment

So you want to do a: Single Cell RNA-seq experiment

Size: 15.3 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 4

j-andrews7/KnowledgeDump

Gotta keep the brain empty to learn more. This is my easily digestible backup.

Size: 13.7 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 1 - Forks: 0

alperoglu/ASTRID

Tool for quick and standardized annotation of single cell transcriptomics data

Language: Python - Size: 120 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

ForwardStar/sctreeshap

An effective tool for single-cell RNA sequencing.

Language: Python - Size: 418 MB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

raveancic/scRNAaltas_TNBC_mm

Language: Python - Size: 22.5 KB - Last synced at: 6 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 2

Charlene717/H5AD_PRJCA001063_PDAC

Creater: Charlene717

Language: R - Size: 183 KB - Last synced at: 8 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

TomKellyGenetics/cellranger_clean Fork of mckinsel/cellranger_clean

10x Cell Ranger Docker Image

Language: Shell - Size: 42 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

ngshasan/single-cell-RNA-Seq-Data-Analysis-Methods

single-cell-RNA-Seq-Data-Analysis-Methods

Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

TomKellyGenetics/UniverSCAFE

Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data

Language: Dockerfile - Size: 31.2 MB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

ethan-mccarthy/scrnahelper

I've written a few functions that help me look through scRNA-seq data while working with Seurat.

Language: R - Size: 11.7 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0