Topic: "atacseq"
genome/bfx-workshop
A course on genomics and bioinformatics from WU
Language: HTML - Size: 406 MB - Last synced at: about 12 hours ago - Pushed at: 19 days ago - Stars: 68 - Forks: 25
maxplanck-ie/ATACofthesnake
Differential accessibility calculation for bulk-ATAC seq.
Language: Python - Size: 166 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 1
amitjavilaventura/ATACseq-snakemake
Snakemake pipeline to run ATAC-seq preprocessing.
Language: Python - Size: 146 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
utdal/ATACSeq-NextFlow-Pipeline
This is an automated workflow pipeline for analyzing bulk ATAC-seq data, implemented primarily in bash scripts, and wrapped in a NextFlow workflow.
Language: Shell - Size: 340 KB - Last synced at: 2 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
CompBioLevings/snATAC-and-scRNA-seq-plots
This repository consists of two **Jupyter Notebooks** created to document a comparison of a mouse brain snATAC-seq (single nuclei assay for transposase accessible chromatin with sequencing) data set from http://catlas.org/mousebrain/ with a scRNA-seq (single cell RNA sequencing) data set from the Linnarsson lab's http://mousebrain.org/. Specifically, in this code, I identify differences in neuronal vs other cell types in the mouse brain based on chromatin accessibility (snATAC-seq signal of a specific region aggregated by cell type/cluster) and gene expression (scRNA-seq signal aggregated by cell type/cluster).
Language: Jupyter Notebook - Size: 15.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
crickbabs/BABS-ATACSeqPE
This pipeline has been superceeded. Please use >>>
Language: Groovy - Size: 5.05 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
Gab-23/Thesis-IEO
The project focuses on the devlopment and refinement of a Machine Learning model enabling the prediction of chromatin accessibility variation at the genomic window level (of size 1Mbp or 0.1Mbp)
Language: Jupyter Notebook - Size: 15.5 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0
pipaber/Multi-omics
This is a repository to show my experience analyzing different kinds of Omics data.
Language: JavaScript - Size: 5.46 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
CodeInTheSkies/Th17-Cell-Pathogenicity-Data
Code accompanying the paper titled "Cholinergic control of Th17 cell pathogenicity in experimental autoimmune encephalomyelitis"
Language: R - Size: 28.9 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
