Topic: "cell-type-annotation"
cafferychen777/mLLMCelltype
An iterative multi-LLM consensus framework for accurate cell type annotation in single-cell RNA-seq data
Language: Python - Size: 57.9 MB - Last synced at: about 15 hours ago - Pushed at: 10 days ago - Stars: 514 - Forks: 47
zjunlp/InstructCell
A Multi-Modal AI Copilot for Single-Cell Analysis with Instruction Following
Language: Jupyter Notebook - Size: 10.7 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 19 - Forks: 0
igordot/clustermole
Unbiased single-cell transcriptomic data cell type identification
Language: R - Size: 17.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 0
biomed-AI/SANGO
The official implementation for "SANGO".
Language: Jupyter Notebook - Size: 18.2 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 2
Eggong/OTMODE
OTMODE: An Optimal Transport-Based Framework for Differential Feature Identification in Single-Cell Multi-Omics
Language: Jupyter Notebook - Size: 12.1 MB - Last synced at: 19 days ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 0
cafferychen777/awesome-scrna-annotation
A curated list of tools and methods for scRNA-seq cell type annotation
Size: 5.86 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 1 - Forks: 0
SUwonglab/cRegulon
cRegulon is an optimization model to identify combinatorial regulon from single cell expression and chromatin accessibility data.
Language: Python - Size: 18.5 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
swainasish/ScInfeR
graph-based cell type annotation toolkit for single-cell RNA-seq, ATAC-seq, and spatial omics
Language: R - Size: 31.4 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
NoWon1/scRNA_seq_analysis
This repository contains an analysis pipeline for processing and visualizing single-cell RNA sequencing (scRNA-seq) data using the Seurat package in R. The dataset used is the Peripheral Blood Mononuclear Cells (PBMC) 3K dataset from 10X Genomics.
Language: R - Size: 530 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0
DuanLab1/scLearn Fork of bm2-lab/scLearn
scLearn：Learning for single cell assignment
Size: 354 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0
xinhui56/awesome-scrna-annotation
A curated list of tools and methods for scRNA-seq cell type annotation
Size: 6.84 KB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0
evan950608/NYCU_BMI_scRNA_study
Source code for the study "Marker Gene Identification Algorithm of Precision Clustering for Single-Cell Sequencing," conducted at the Institute of Biomedical Informatics, National Yang Ming Chiao Tung University (NYCU BMI) by Zhe-Yuan Li, published in January 2025.
Language: Jupyter Notebook - Size: 1.89 GB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
AMSSwanglab/cRegulon
cRegulon is an optimization model to identify combinatorial regulon from single cell expression and chromatin accessibility data.
Language: Python - Size: 18.4 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pwwang/hitype
Hierarchical and high-resolution cell-type identification for single-cell RNA-seq data based on ScType.
Language: R - Size: 4.87 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
