Ecosyste.ms: Repos

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Package Usage: pypi: ubiquerg

Various utility functions
28 versions
Latest release: 10 months ago
12 dependent packages
38,405 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/ubiquerg

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/pepkit%2Fubiquerg

Dependent Repos 66

rpatil524/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 600 MB - Last synced: about 11 hours ago - Pushed: 6 days ago

neoformit/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 594 MB - Last synced: 3 months ago - Pushed: 3 months ago

mr-c/galaxy Fork of galaxyproject/galaxy
Data intensive biology for everyone.
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt

Size: 597 MB - Last synced: 6 months ago - Pushed: 6 months ago

pnm27/snRNA_scRNA_Pipeline
Snakemake Pipeline with "selectable" modules
  • =0.6.1=pyh9f0ad1d_0 requirements/requirements_conda.txt

Size: 9.99 MB - Last synced: 28 days ago - Pushed: 28 days ago

pepkit/pephubgen
Static file generator for reading in a PEP storage URL and generating a static file structure to traverse and fetch relevant data on the PEP
  • ==0.6.2 requirements/requirements-all.txt

Size: 18.6 KB - Last synced: 2 months ago - Pushed: over 2 years ago

pepkit/caravel
A web GUI for pipeline job submission and management
  • >=0.4.6 caravel/requirements/requirements-all.txt

Size: 1.2 MB - Last synced: 2 months ago - Pushed: over 3 years ago

pepkit/pepstat
  • * requirements/requirements-all.txt

Size: 142 KB - Last synced: 2 months ago - Pushed: almost 2 years ago

pepkit/pepconvert 📦
Convert PEP metadata into other formats
  • >=0.5.2 requirements/requirements-all.txt

Size: 14.6 KB - Last synced: 2 months ago - Pushed: about 3 years ago

pepkit/pepkit
Meta-package for all pepkit tools
  • >=0.0.3 requirements/requirements-all.txt

Size: 7.81 KB - Last synced: 2 months ago - Pushed: about 5 years ago

nsheff/yacman2
YAML configuration manager
  • >=0.6.1 requirements/requirements-all.txt

Size: 54.7 KB - Last synced: over 1 year ago - Pushed: almost 2 years ago

adzkiasalima/galaxy-api
  • ==0.6.2 requirements.txt

Size: 10.7 KB - Last synced: over 1 year ago - Pushed: about 2 years ago

NMRL/Ardetype
Pipeline allows to perform reference-guided de-novo assembly of bacterial genomes, starting from Illumina PE150 fastq files.
  • * unittests/requirements.txt

Size: 100 MB - Last synced: 25 days ago - Pushed: 26 days ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

PMBio/scdali_analyses
  • =0.6.1=pyh9f0ad1d_0 requirements.txt

Size: 34.3 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

mskcc-omics-workflows/IMPACT-pipeline
  • 0.6.2 poetry.lock

Size: 172 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

PaNGalaxy/galaxy
a fork of Galaxy repo from https://github.com/galaxyproject/galaxy
  • ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 606 MB - Last synced: 14 days ago - Pushed: 15 days ago

lobrylab/PitViper
Snakemake pipeline for meta-analysis of functional screening data
  • =0.7.0=pyhd8ed1ab_0 PitViper/requirements.txt

Size: 30.2 MB - Last synced: 20 days ago - Pushed: 21 days ago

dnalinkbi/SARS-CoV-Dashboard
PacBio SARS-CoV Analysis Dashboard
  • ==0.6.2 requirements.txt

Size: 4.62 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

davebx/galaxy Fork of galaxyproject/galaxy
Data intensive biology for everyone.
  • ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 531 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

laperlej/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 596 MB - Last synced: about 1 month ago - Pushed: 11 months ago

pxu23/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.1 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.1 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.1 requirements.txt

Size: 519 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago

santinb/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 550 MB - Last synced: 10 months ago - Pushed: about 2 years ago

bdwheele/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 597 MB - Last synced: 10 months ago - Pushed: 10 months ago

pari-neic/galaxy-playbook
Ansible playbooks to deploy a PaRI Galaxy instance, with selected analysis workflows from usegalaxy.eu and the tools used by the workflows.
  • ==0.5.1 env/common/files/galaxy/mulled/default-container/requirements.txt

Size: 417 KB - Last synced: 10 months ago - Pushed: over 2 years ago

TanguyGen/galaxy Fork of galaxyproject/galaxy
Add a new datatype: STL
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 597 MB - Last synced: 10 months ago - Pushed: 10 months ago

cpheidelberg/galaxy-computational-pathology Fork of galaxyproject/galaxy
galaxy tools for computational pathology
  • ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.3 requirements.txt

Size: 598 MB - Last synced: 10 months ago - Pushed: 10 months ago

possiblyMikeB/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 543 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

claudiofr/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 598 MB - Last synced: 9 months ago - Pushed: 9 months ago

Bioconductor/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.3 requirements.txt

Size: 586 MB - Last synced: 20 days ago - Pushed: 7 months ago

vazovn/galaxyproject-main-repo Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.1 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.1 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.1 requirements.txt

Size: 517 MB - Last synced: 9 months ago - Pushed: about 3 years ago

lopiola/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.3 requirements.txt

Size: 599 MB - Last synced: 8 months ago - Pushed: 9 months ago

VictorGoitea/galaxy_MaREA
Run MaREA in galaxy
  • ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 554 MB - Last synced: 9 months ago - Pushed: over 1 year ago

Marie59/galaxy Fork of usegalaxy-eu/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 613 MB - Last synced: 6 days ago - Pushed: 6 days ago

gerlichlab/looptrace
Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
  • 0.6.2 poetry.lock

Size: 10.2 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

lldelisle/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 592 MB - Last synced: 4 months ago - Pushed: 4 months ago

pcm32/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 595 MB - Last synced: 8 months ago - Pushed: 8 months ago

tuncK/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.3 requirements.txt

Size: 592 MB - Last synced: 4 months ago - Pushed: 4 months ago

scilus/nf-scil
SCIL Nextflow Toolbox
  • 0.6.3 poetry.lock

Size: 116 MB - Last synced: 6 days ago - Pushed: 6 days ago

Tuks-ICMM/Pharmacogenetic-Analysis-Pipeline
A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.
  • ==0.6.2 requirements.deb.txt
  • ==0.6.2 requirements.win.txt

Size: 65.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

databio/geniml
Genomic interval machine learning
  • >=0.6.3 requirements/requirements-all.txt

Size: 11 MB - Last synced: 18 days ago - Pushed: 18 days ago

galaxyproject/galaxy
Data intensive science for everyone.
  • ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.3 requirements.txt

Size: 616 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

pepkit/pepembed
  • * requirements/requirements-all.txt

Size: 432 KB - Last synced: 2 months ago - Pushed: 4 months ago

CarolinaPB/population-structural-var-calling-smoove
population structural variant calling with smoove
  • =0.6.1=pyh9f0ad1d_0 requirements.txt

Size: 1.84 MB - Last synced: 4 months ago - Pushed: 4 months ago

LiliMiaohub/national_science_funding
  • =0.6.2=pyhd8ed1ab_0 requirements.txt

Size: 36.8 MB - Last synced: 3 months ago - Pushed: 3 months ago

ayushp1202/ListifyAPI
  • ==0.6.3 requirements.txt

Size: 14.6 KB - Last synced: 2 months ago - Pushed: 2 months ago

spack/pypi-to-spack-package
Convert PyPI entries to Spack package.py
  • ==0.6.2 spack_requirements.txt

Size: 545 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

Paprikant/galaxy-beacon
  • ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
  • ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
  • ==0.6.2 requirements.txt

Size: 549 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

Lucas04-nhr/Human-SNP
A repository to set up the human SNP calling pipeline
  • =0.7.0=pyhd8ed1ab_0 wes/requirements.txt

Size: 66.4 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

angrygeese/DynamenaProject_BI2023-24
  • ==0.6.3 requirements_unix.txt

Size: 72.5 MB - Last synced: 18 days ago - Pushed: 18 days ago

refgenie/refget
Python tools for identification and distribution of reference sequences and sequence collections
  • >=0.6.1 seqcolapi/requirements/requirements-seqcolapi.txt

Size: 361 KB - Last synced: 6 days ago - Pushed: 6 days ago