Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: pypi: ubiquerg
Various utility functions
28 versions
Latest release: 10 months ago
12 dependent packages
38,405 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/ubiquerg
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/pepkit%2Fubiquerg
Dependent Repos 66
rpatil524/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 600 MB - Last synced: about 11 hours ago - Pushed: 6 days ago
neoformit/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 594 MB - Last synced: 3 months ago - Pushed: 3 months ago
mr-c/galaxy Fork of galaxyproject/galaxy
Data intensive biology for everyone.- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
Size: 597 MB - Last synced: 6 months ago - Pushed: 6 months ago
pnm27/snRNA_scRNA_Pipeline
Snakemake Pipeline with "selectable" modules- =0.6.1=pyh9f0ad1d_0 requirements/requirements_conda.txt
Size: 9.99 MB - Last synced: 28 days ago - Pushed: 28 days ago
pepkit/pephubgen
Static file generator for reading in a PEP storage URL and generating a static file structure to traverse and fetch relevant data on the PEP- ==0.6.2 requirements/requirements-all.txt
Size: 18.6 KB - Last synced: 2 months ago - Pushed: over 2 years ago
pepkit/caravel
A web GUI for pipeline job submission and management- >=0.4.6 caravel/requirements/requirements-all.txt
Size: 1.2 MB - Last synced: 2 months ago - Pushed: over 3 years ago
pepkit/pepstat
- * requirements/requirements-all.txt
Size: 142 KB - Last synced: 2 months ago - Pushed: almost 2 years ago
pepkit/pepconvert 📦
Convert PEP metadata into other formats- >=0.5.2 requirements/requirements-all.txt
Size: 14.6 KB - Last synced: 2 months ago - Pushed: about 3 years ago
pepkit/pepkit
Meta-package for all pepkit tools- >=0.0.3 requirements/requirements-all.txt
Size: 7.81 KB - Last synced: 2 months ago - Pushed: about 5 years ago
nsheff/yacman2
YAML configuration manager- >=0.6.1 requirements/requirements-all.txt
Size: 54.7 KB - Last synced: over 1 year ago - Pushed: almost 2 years ago
adzkiasalima/galaxy-api
- ==0.6.2 requirements.txt
Size: 10.7 KB - Last synced: over 1 year ago - Pushed: about 2 years ago
NMRL/Ardetype
Pipeline allows to perform reference-guided de-novo assembly of bacterial genomes, starting from Illumina PE150 fastq files.- * unittests/requirements.txt
Size: 100 MB - Last synced: 25 days ago - Pushed: 26 days ago
PMBio/scdali_analyses
- =0.6.1=pyh9f0ad1d_0 requirements.txt
Size: 34.3 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
mskcc-omics-workflows/IMPACT-pipeline
- 0.6.2 poetry.lock
Size: 172 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
PaNGalaxy/galaxy
a fork of Galaxy repo from https://github.com/galaxyproject/galaxy- ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 606 MB - Last synced: 14 days ago - Pushed: 15 days ago
lobrylab/PitViper
Snakemake pipeline for meta-analysis of functional screening data- =0.7.0=pyhd8ed1ab_0 PitViper/requirements.txt
Size: 30.2 MB - Last synced: 20 days ago - Pushed: 21 days ago
dnalinkbi/SARS-CoV-Dashboard
PacBio SARS-CoV Analysis Dashboard- ==0.6.2 requirements.txt
Size: 4.62 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
davebx/galaxy Fork of galaxyproject/galaxy
Data intensive biology for everyone.- ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 531 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
laperlej/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 596 MB - Last synced: about 1 month ago - Pushed: 11 months ago
pxu23/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.1 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.1 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.1 requirements.txt
Size: 519 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago
santinb/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 550 MB - Last synced: 10 months ago - Pushed: about 2 years ago
bdwheele/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 597 MB - Last synced: 10 months ago - Pushed: 10 months ago
pari-neic/galaxy-playbook
Ansible playbooks to deploy a PaRI Galaxy instance, with selected analysis workflows from usegalaxy.eu and the tools used by the workflows.- ==0.5.1 env/common/files/galaxy/mulled/default-container/requirements.txt
Size: 417 KB - Last synced: 10 months ago - Pushed: over 2 years ago
TanguyGen/galaxy Fork of galaxyproject/galaxy
Add a new datatype: STL- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 597 MB - Last synced: 10 months ago - Pushed: 10 months ago
cpheidelberg/galaxy-computational-pathology Fork of galaxyproject/galaxy
galaxy tools for computational pathology- ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.3 requirements.txt
Size: 598 MB - Last synced: 10 months ago - Pushed: 10 months ago
possiblyMikeB/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 543 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
claudiofr/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 598 MB - Last synced: 9 months ago - Pushed: 9 months ago
Bioconductor/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.3 requirements.txt
Size: 586 MB - Last synced: 20 days ago - Pushed: 7 months ago
vazovn/galaxyproject-main-repo Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.1 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.1 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.1 requirements.txt
Size: 517 MB - Last synced: 9 months ago - Pushed: about 3 years ago
lopiola/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.3 requirements.txt
Size: 599 MB - Last synced: 8 months ago - Pushed: 9 months ago
VictorGoitea/galaxy_MaREA
Run MaREA in galaxy- ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 554 MB - Last synced: 9 months ago - Pushed: over 1 year ago
Marie59/galaxy Fork of usegalaxy-eu/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 613 MB - Last synced: 6 days ago - Pushed: 6 days ago
gerlichlab/looptrace
Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace- 0.6.2 poetry.lock
Size: 10.2 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
lldelisle/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 592 MB - Last synced: 4 months ago - Pushed: 4 months ago
pcm32/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 595 MB - Last synced: 8 months ago - Pushed: 8 months ago
tuncK/galaxy Fork of galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.3 requirements.txt
Size: 592 MB - Last synced: 4 months ago - Pushed: 4 months ago
scilus/nf-scil
SCIL Nextflow Toolbox- 0.6.3 poetry.lock
Size: 116 MB - Last synced: 6 days ago - Pushed: 6 days ago
Tuks-ICMM/Pharmacogenetic-Analysis-Pipeline
A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.- ==0.6.2 requirements.deb.txt
- ==0.6.2 requirements.win.txt
Size: 65.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
databio/geniml
Genomic interval machine learning- >=0.6.3 requirements/requirements-all.txt
Size: 11 MB - Last synced: 18 days ago - Pushed: 18 days ago
galaxyproject/galaxy
Data intensive science for everyone.- ==0.6.3 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.3 requirements.txt
Size: 616 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
pepkit/pepembed
- * requirements/requirements-all.txt
Size: 432 KB - Last synced: 2 months ago - Pushed: 4 months ago
CarolinaPB/population-structural-var-calling-smoove
population structural variant calling with smoove- =0.6.1=pyh9f0ad1d_0 requirements.txt
Size: 1.84 MB - Last synced: 4 months ago - Pushed: 4 months ago
LiliMiaohub/national_science_funding
- =0.6.2=pyhd8ed1ab_0 requirements.txt
Size: 36.8 MB - Last synced: 3 months ago - Pushed: 3 months ago
ayushp1202/ListifyAPI
- ==0.6.3 requirements.txt
Size: 14.6 KB - Last synced: 2 months ago - Pushed: 2 months ago
spack/pypi-to-spack-package
Convert PyPI entries to Spack package.py- ==0.6.2 spack_requirements.txt
Size: 545 KB - Last synced: about 2 months ago - Pushed: about 2 months ago
Paprikant/galaxy-beacon
- ==0.6.2 lib/galaxy/dependencies/dev-requirements.txt
- ==0.6.2 lib/galaxy/dependencies/pinned-requirements.txt
- ==0.6.2 requirements.txt
Size: 549 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago
Lucas04-nhr/Human-SNP
A repository to set up the human SNP calling pipeline- =0.7.0=pyhd8ed1ab_0 wes/requirements.txt
Size: 66.4 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
angrygeese/DynamenaProject_BI2023-24
- ==0.6.3 requirements_unix.txt
Size: 72.5 MB - Last synced: 18 days ago - Pushed: 18 days ago
refgenie/refget
Python tools for identification and distribution of reference sequences and sequence collections- >=0.6.1 seqcolapi/requirements/requirements-seqcolapi.txt
Size: 361 KB - Last synced: 6 days ago - Pushed: 6 days ago