Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / davebx / galaxy
Data intensive biology for everyone.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/davebx%2Fgalaxy
Fork of galaxyproject/galaxy
Stars: 0
Forks: 0
Open Issues: 0
License: other
Language: Python
Repo Size: 531 MB
Dependencies:
3,233
Created: about 9 years ago
Updated: over 2 years ago
Last pushed: over 2 years ago
Last synced: about 1 month ago
Files
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Readme
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Dependencies
requirements.txt
pypi
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- alabaster ==0.7.12 development
- amqp ==5.0.9 development
- anyio ==3.4.0 development
- appdirs ==1.4.4 development
- argcomplete ==2.0.0 development
- asgiref ==3.4.1 development
- async-generator ==1.10 development
- atomicwrites ==1.4.0 development
- attmap ==0.13.2 development
- attrs ==21.4.0 development
- babel ==2.9.1 development
- bagit ==1.8.1 development
- bagit-profile ==1.3.1 development
- bcrypt ==3.2.0 development
- bdbag ==1.6.3 development
- beaker ==1.11.0 development
- billiard ==3.6.4.0 development
- bioblend ==0.16.0 development
- black ==21.12b0 development
- bleach ==4.1.0 development
- boltons ==21.0.0 development
- boto ==2.49.0 development
- bx-python ==0.8.13 development
- cachecontrol ==0.12.10 development
- cached-property ==1.5.2 development
- celery ==5.2.3 development
- certifi ==2021.10.8 development
- cffi ==1.15.0 development
- charset-normalizer ==2.0.10 development
- cheetah3 ==3.2.6.post1 development
- circus ==0.17.1 development
- click ==8.0.3 development
- click-didyoumean ==0.3.0 development
- click-plugins ==1.1.1 development
- click-repl ==0.2.0 development
- cloudauthz ==0.6.0 development
- cloudbridge ==3.0.0 development
- colorama ==0.4.4 development
- coloredlogs ==15.0.1 development
- commonmark ==0.9.1 development
- coverage ==6.2 development
- cryptography ==36.0.1 development
- cwltest ==2.2.20210901154959 development
- cwltool ==3.1.20211107152837 development
- darker ==1.3.2 development
- decorator ==5.1.1 development
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- deprecated ==1.2.13 development
- deprecation ==2.1.0 development
- dictobj ==0.4 development
- docopt ==0.6.2 development
- docutils ==0.16 development
- ecdsa ==0.17.0 development
- edam-ontology ==1.25.2 development
- fabric3 ==1.14.post1 development
- fastapi ==0.71.0 development
- fastapi-utils ==0.2.1 development
- fluent-logger ==0.10.0 development
- fs ==2.4.14 development
- funcsigs ==1.0.2 development
- future ==0.18.2 development
- galaxy-sequence-utils ==1.1.5 development
- greenlet ==1.1.2 development
- gunicorn ==20.1.0 development
- gxformat2 ==0.15.0 development
- h11 ==0.12.0 development
- h5py ==3.6.0 development
- httpcore ==0.14.4 development
- httpx ==0.21.3 development
- humanfriendly ==10.0 development
- idna ==3.3 development
- imagesize ==1.3.0 development
- importlib-metadata ==4.10.0 development
- importlib-resources ==5.4.0 development
- iniconfig ==1.1.1 development
- isa-rwval ==0.10.10 development
- isodate ==0.6.1 development
- jinja2 ==3.0.3 development
- jsonschema ==4.3.3 development
- junit-xml ==1.9 development
- kombu ==5.2.3 development
- lagom ==1.7.0 development
- lockfile ==0.12.2 development
- lxml ==4.7.1 development
- mako ==1.1.6 development
- markdown ==3.3.6 development
- markdown-it-reporter ==0.0.2 development
- markupsafe ==2.0.1 development
- mercurial ==6.0.1 development
- mirakuru ==2.4.1 development
- mistune ==0.8.4 development
- mrcfile ==1.3.0 development
- msgpack ==1.0.3 development
- mypy-extensions ==0.4.3 development
- networkx ==2.5 development
- nodeenv ==1.6.0 development
- nose ==1.3.7 development
- nosehtml ==0.4.6 development
- numpy ==1.21.1 development
- oauthlib ==3.1.1 development
- outcome ==1.1.0 development
- oyaml ==1.0 development
- packaging ==21.3 development
- paramiko ==2.8.1 development
- parsley ==1.3 development
- paste ==3.5.0 development
- pastedeploy ==2.1.1 development
- pathspec ==0.9.0 development
- pbr ==5.8.0 development
- platformdirs ==2.4.1 development
- pluggy ==1.0.0 development
- port-for ==0.6.1 development
- prettytable ==3.0.0 development
- prompt-toolkit ==3.0.24 development
- prov ==1.5.1 development
- psutil ==5.9.0 development
- pulsar-galaxy-lib ==0.14.13 development
- py ==1.11.0 development
- pyasn1 ==0.4.8 development
- pycparser ==2.21 development
- pycryptodome ==3.12.0 development
- pydantic ==1.9.0 development
- pydot ==1.4.2 development
- pyeventsystem ==0.1.0 development
- pyfaidx ==0.6.3.1 development
- pygithub ==1.55 development
- pygments ==2.11.2 development
- pyjwt ==2.3.0 development
- pykwalify ==1.8.0 development
- pynacl ==1.5.0 development
- pyopenssl ==21.0.0 development
- pyparsing ==3.0.6 development
- pyreadline ==2.1 development
- pyreadline3 ==3.3 development
- pyrsistent ==0.18.0 development
- pysam ==0.18.0 development
- pytest ==6.2.5 development
- pytest-asyncio ==0.16.0 development
- pytest-celery ==0.0.0 development
- pytest-cov ==3.0.0 development
- pytest-html ==3.1.1 development
- pytest-json-report ==1.4.1 development
- pytest-metadata ==1.11.0 development
- pytest-mock ==3.6.1 development
- pytest-postgresql ==4.1.0 development
- pytest-pythonpath ==0.7.3 development
- pytest-shard ==0.1.2 development
- python-dateutil ==2.8.2 development
- python-irodsclient ==1.0.0 development
- python-jose ==3.3.0 development
- python-multipart ==0.0.5 development
- python3-openid ==3.2.0 development
- pytz ==2021.3 development
- pyuwsgi ==2.0.20 development
- pyyaml ==6.0 development
- pyzmq ==22.3.0 development
- rdflib ==6.0.2 development
- recommonmark ==0.7.1 development
- refgenconf ==0.12.2 development
- repoze.lru ==0.7 development
- requests ==2.27.1 development
- requests-oauthlib ==1.3.0 development
- requests-toolbelt ==0.9.1 development
- responses ==0.16.0 development
- rfc3986 ==1.5.0 development
- rich ==10.16.2 development
- routes ==2.5.1 development
- rsa ==4.8 development
- ruamel.yaml ==0.17.17 development
- ruamel.yaml.clib ==0.2.6 development
- schema-salad ==8.2.20220103095339 development
- selenium ==4.1.0 development
- setuptools-scm ==5.0.2 development
- shellescape ==3.8.1 development
- six ==1.16.0 development
- sniffio ==1.2.0 development
- snowballstemmer ==2.2.0 development
- social-auth-core ==4.0.3 development
- sortedcontainers ==2.4.0 development
- sphinx ==4.3.2 development
- sphinx-markdown-tables ==0.0.15 development
- sphinx-rtd-theme ==1.0.0 development
- sphinxcontrib-applehelp ==1.0.2 development
- sphinxcontrib-devhelp ==1.0.2 development
- sphinxcontrib-htmlhelp ==2.0.0 development
- sphinxcontrib-jsmath ==1.0.1 development
- sphinxcontrib-qthelp ==1.0.3 development
- sphinxcontrib-serializinghtml ==1.1.5 development
- sqlalchemy ==1.4.29 development
- sqlalchemy-migrate ==0.13.0 development
- sqlitedict ==1.7.0 development
- sqlparse ==0.4.2 development
- starlette ==0.17.1 development
- starlette-context ==0.3.3 development
- statsd ==3.3.0 development
- svgwrite ==1.4.1 development
- tempita ==0.5.2 development
- tenacity ==8.0.1 development
- testfixtures ==6.18.3 development
- tifffile ==2021.11.2 development
- tinydb ==4.5.0 development
- toml ==0.10.2 development
- tomli ==1.2.3 development
- tornado ==6.1 development
- tqdm ==4.62.3 development
- trio ==0.19.0 development
- trio-websocket ==0.9.2 development
- tuspy ==0.2.5 development
- tuswsgi ==0.5.4 development
- twill ==3.0.1 development
- typed-ast ==1.5.1 development
- typing-extensions ==4.0.1 development
- tzlocal ==2.1 development
- ubiquerg ==0.6.2 development
- urllib3 ==1.26.8 development
- uvicorn ==0.16.0 development
- vine ==5.0.0 development
- watchdog ==2.1.6 development
- wcwidth ==0.2.5 development
- webencodings ==0.5.1 development
- webob ==1.8.7 development
- whoosh ==2.7.4 development
- wrapt ==1.13.3 development
- wsproto ==1.0.0 development
- xmlrunner ==1.7.7 development
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- zipstream-new ==1.1.8 development
- attrs ==21.4.0
- flake8 ==4.0.1
- flake8-bugbear ==21.11.29
- flake8-import-order ==0.18.1
- importlib-metadata ==4.2.0
- mccabe ==0.6.1
- mypy ==0.910
- mypy-extensions ==0.4.3
- pycodestyle ==2.8.0
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- toml ==0.10.2
- typed-ast ==1.4.3
- types-Markdown ==3.3.11
- types-PyYAML ==6.0.2
- types-bleach ==4.1.4
- types-boto ==2.49.5
- types-contextvars ==2.4.1
- types-cryptography ==3.3.11
- types-dataclasses ==0.6.3
- types-docutils ==0.17.3
- types-enum34 ==1.1.2
- types-ipaddress ==1.0.2
- types-paramiko ==2.8.7
- types-pkg-resources ==0.1.3
- types-python-dateutil ==2.8.5
- types-requests ==2.27.2
- types-six ==1.16.8
- typing_extensions ==4.0.1
- zipp ==3.7.0
- adal ==1.2.7
- aiofiles ==0.8.0
- amqp ==5.0.9
- anyio ==3.4.0
- appdirs ==1.4.4
- argcomplete ==2.0.0
- asgiref ==3.4.1
- attmap ==0.13.2
- attrs ==21.4.0
- babel ==2.9.1
- bagit ==1.8.1
- bagit-profile ==1.3.1
- bcrypt ==3.2.0
- bdbag ==1.6.3
- beaker ==1.11.0
- billiard ==3.6.4.0
- bioblend ==0.16.0
- bleach ==4.1.0
- boltons ==21.0.0
- boto ==2.49.0
- bx-python ==0.8.13
- cachecontrol ==0.12.10
- cached-property ==1.5.2
- celery ==5.2.3
- certifi ==2021.10.8
- cffi ==1.15.0
- charset-normalizer ==2.0.10
- cheetah3 ==3.2.6.post1
- circus ==0.17.1
- click ==8.0.3
- click-didyoumean ==0.3.0
- click-plugins ==1.1.1
- click-repl ==0.2.0
- cloudauthz ==0.6.0
- cloudbridge ==3.0.0
- colorama ==0.4.4
- coloredlogs ==15.0.1
- commonmark ==0.9.1
- cryptography ==36.0.1
- cwltool ==3.1.20211107152837
- decorator ==5.1.1
- defusedxml ==0.7.1
- deprecation ==2.1.0
- dictobj ==0.4
- docopt ==0.6.2
- docutils ==0.16
- ecdsa ==0.17.0
- edam-ontology ==1.25.2
- fabric3 ==1.14.post1
- fastapi ==0.71.0
- fastapi-utils ==0.2.1
- fs ==2.4.14
- funcsigs ==1.0.2
- future ==0.18.2
- galaxy-sequence-utils ==1.1.5
- greenlet ==1.1.2
- gxformat2 ==0.15.0
- h11 ==0.12.0
- h5py ==3.6.0
- humanfriendly ==10.0
- idna ==3.3
- importlib-metadata ==4.10.0
- importlib-resources ==5.4.0
- isa-rwval ==0.10.10
- isodate ==0.6.1
- jsonschema ==4.3.3
- kombu ==5.2.3
- lagom ==1.7.0
- lockfile ==0.12.2
- lxml ==4.7.1
- mako ==1.1.6
- markdown ==3.3.6
- markupsafe ==2.0.1
- mercurial ==6.0.1
- mistune ==0.8.4
- mrcfile ==1.3.0
- msgpack ==1.0.3
- mypy-extensions ==0.4.3
- networkx ==2.5
- nodeenv ==1.6.0
- nose ==1.3.7
- numpy ==1.21.1
- oauthlib ==3.1.1
- oyaml ==1.0
- packaging ==21.3
- paramiko ==2.8.1
- parsley ==1.3
- paste ==3.5.0
- pastedeploy ==2.1.1
- pbr ==5.8.0
- prompt-toolkit ==3.0.24
- prov ==1.5.1
- psutil ==5.9.0
- pulsar-galaxy-lib ==0.14.13
- py ==1.11.0
- pyasn1 ==0.4.8
- pycparser ==2.21
- pycryptodome ==3.12.0
- pydantic ==1.9.0
- pydot ==1.4.2
- pyeventsystem ==0.1.0
- pyfaidx ==0.6.3.1
- pygments ==2.11.2
- pyjwt ==2.3.0
- pykwalify ==1.8.0
- pynacl ==1.5.0
- pyparsing ==3.0.6
- pyreadline ==2.1
- pyreadline3 ==3.3
- pyrsistent ==0.18.0
- pysam ==0.18.0
- python-dateutil ==2.8.2
- python-jose ==3.3.0
- python-multipart ==0.0.5
- python3-openid ==3.2.0
- pytz ==2021.3
- pyuwsgi ==2.0.20
- pyyaml ==6.0
- pyzmq ==22.3.0
- rdflib ==6.0.2
- refgenconf ==0.12.2
- repoze.lru ==0.7
- requests ==2.27.1
- requests-oauthlib ==1.3.0
- requests-toolbelt ==0.9.1
- rich ==10.16.2
- routes ==2.5.1
- rsa ==4.8
- ruamel.yaml ==0.17.17
- ruamel.yaml.clib ==0.2.6
- schema-salad ==8.2.20220103095339
- setuptools-scm ==5.0.2
- shellescape ==3.8.1
- six ==1.16.0
- sniffio ==1.2.0
- social-auth-core ==4.0.3
- sortedcontainers ==2.4.0
- sqlalchemy ==1.4.29
- sqlalchemy-migrate ==0.13.0
- sqlitedict ==1.7.0
- sqlparse ==0.4.2
- starlette ==0.17.1
- starlette-context ==0.3.3
- svgwrite ==1.4.1
- tempita ==0.5.2
- tenacity ==8.0.1
- tifffile ==2021.11.2
- tornado ==6.1
- tqdm ==4.62.3
- tuswsgi ==0.5.4
- typing-extensions ==4.0.1
- tzlocal ==2.1
- ubiquerg ==0.6.2
- urllib3 ==1.26.8
- uvicorn ==0.16.0
- vine ==5.0.0
- wcwidth ==0.2.5
- webencodings ==0.5.1
- webob ==1.8.7
- whoosh ==2.7.4
- yacman ==0.8.4
- zipp ==3.7.0
- zipstream-new ==1.1.8
- Beaker *
- Fabric3 *
- Mako *
- Markdown *
- Whoosh *
- celery *
- cloudauthz ==0.6.0
- galaxy-auth *
- galaxy-data *
- galaxy-job-execution *
- galaxy-job-metrics *
- galaxy-tool-util *
- galaxy-web-framework *
- galaxy-web-stack *
- gxformat2 *
- kombu *
- lagom *
- paramiko *
- pulsar-galaxy-lib >=0.14.13
- pydantic *
- pykwalify *
- refgenconf >=0.12.0
- sqlitedict *
- svgwrite *
- tuswsgi *
- typing-extensions *
- mock-ssh-server * test
- pytest * test
- testfixtures * test
- pytest * test
- pytest * test
- SQLAlchemy >=1.4.25,<2
- WebOb *
- bdbag *
- bx-python *
- contextvars *
- galaxy-files *
- galaxy-objectstore *
- galaxy-sequence-utils *
- galaxy-util *
- h5py *
- isa-rwval *
- mrcfile *
- numpy *
- parsley *
- pycryptodome *
- pydantic *
- pysam *
- social-auth-core ==4.0.3
- sqlalchemy-migrate *
- tifffile <=2020.9.3
- typing-extensions *
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- galaxy-test-base * test
- pytest * test
- galaxy-data * test
- nose * test
- pytest * test
- pytest * test
- galaxy-app * test
- galaxy-data * test
- galaxy-test-base * test
- galaxy-tool-util * test
- galaxy-util * test
- galaxy-web-framework * test
- galaxy-webapps * test
- nose * test
- pytest * test
- pyyaml * test
- pytest * test
- pytest * test
- galaxy-containers *
- galaxy-util >=20.1.0.dev0
- lxml *
- pydantic *
- pyyaml *
- sortedcontainers *
- typing-extensions *
- pytest * test
- pytest-mock * test
- bleach *
- boltons *
- docutils *
- markupsafe *
- packaging *
- pycryptodome *
- pyyaml *
- requests *
- routes *
- typing-extensions *
- zipstream-new *
- MarkupSafe *
- Routes *
- SQLAlchemy >=1.4.25,<2
- WebOb *
- babel *
- galaxy-data *
- galaxy-util *
- galaxy-web-stack *
- paste *
- pydantic *
- requests *
- pytest * test
- SQLAlchemy >=1.4.25,<2
- galaxy-util *
- pytest * test
- Cheetah3 *
- Mako *
- Whoosh *
- fastapi >=0.68.2,
- fastapi-utils *
- galaxy-app *
- pydantic *
- python-multipart *
- starlette *
- starlette-context *
- typing-extensions *
- uvicorn *
- pytest * test
pyproject.toml
pypi
- NoseHTML * develop
- PyGithub * develop
- Sphinx >=4.0 develop
- cwltest 2.2.20210901154959 develop
- darker * develop
- fluent-logger * develop
- gunicorn * develop
- httpx * develop
- lxml !=4.2.2 develop
- markdown-it-reporter * develop
- pytest * develop
- pytest-asyncio * develop
- pytest-celery * develop
- pytest-cov * develop
- pytest-html * develop
- pytest-json-report * develop
- pytest-mock * develop
- pytest-postgresql !=3.0.0 develop
- pytest-pythonpath * develop
- pytest-shard * develop
- python-irodsclient * develop
- recommonmark * develop
- responses * develop
- selenium * develop
- sphinx_markdown_tables * develop
- sphinx_rtd_theme * develop
- statsd * develop
- testfixtures * develop
- tuspy * develop
- twill * develop
- watchdog * develop
- Babel *
- Beaker 1.11.0
- Cheetah3 !=3.2.6.post2
- Fabric3 *
- Mako *
- Markdown *
- MarkupSafe *
- Mercurial *
- Parsley *
- Paste *
- PyYAML *
- Routes *
- SQLAlchemy >=1.4.25,<2
- WebOb *
- Whoosh *
- aiofiles *
- bdbag *
- bioblend *
- bleach *
- boltons *
- boto *
- bx-python *
- celery *
- circus *
- cloudauthz ==0.6.0
- cloudbridge *
- cwltool ==3.1.20211107152837
- dictobj *
- docutils !=0.17, !=0.17.1
- edam-ontology *
- fastapi >=0.68.2, !=0.69.0, !=0.70.0, !=0.70.1
- fastapi-utils *
- fs *
- future *
- galaxy_sequence_utils *
- gxformat2 *
- h5py *
- isa-rwval *
- kombu *
- lagom *
- mrcfile *
- nodeenv *
- nose *
- numpy *
- paramiko !=2.9.0, !=2.9.1
- psutil *
- pulsar-galaxy-lib >=0.14.13
- pycryptodome *
- pydantic *
- pykwalify *
- pyparsing *
- pysam *
- python >=3.7,<4
- python-multipart *
- pyuwsgi *
- refgenconf >=0.12.0
- requests *
- social-auth-core ==4.0.3
- sortedcontainers *
- sqlalchemy-migrate *
- sqlitedict *
- sqlparse *
- starlette *
- starlette-context *
- svgwrite *
- tifffile *
- tuswsgi *
- typing-extensions *
- uvicorn *
- zipstream-new *