chapmanb/bcbb

Incubator for useful bioinformatics code, primarily in Python and R

Language: Python - Size: 79.4 MB - Last synced: 8 days ago - Pushed: 3 months ago - Stars: 594 - Forks: 243

chapmanb/homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science

Language: Ruby - Size: 164 KB - Last synced: 15 days ago - Pushed: over 7 years ago - Stars: 19 - Forks: 9

chapmanb/bcbio.prioritize

Prioritize small variants, structural variants and coverage based on biological inputs

Language: Clojure - Size: 83 KB - Last synced: 15 days ago - Pushed: over 5 years ago - Stars: 7 - Forks: 0

chapmanb/bcbio-conda

Deprecated conda recipes for bcbio python code and dependencies -- migrated to bioconda

Language: Python - Size: 75.2 KB - Last synced: 15 days ago - Pushed: over 8 years ago - Stars: 7 - Forks: 2

chapmanb/clj-blend

Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j

Language: Clojure - Size: 17.6 KB - Last synced: 17 days ago - Pushed: almost 2 years ago - Stars: 10 - Forks: 2

chapmanb/clj-genomespace

Access GenomeSpace data integration platform with simple Clojure API

Language: Clojure - Size: 115 KB - Last synced: about 1 month ago - Pushed: about 11 years ago - Stars: 0 - Forks: 1

chapmanb/cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

Language: Python - Size: 7.94 MB - Last synced: 4 days ago - Pushed: 5 months ago - Stars: 253 - Forks: 160

chapmanb/RNA-SeQC

Size: 66.4 KB - Last synced: 7 months ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

chapmanb/bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

Language: Clojure - Size: 6.43 MB - Last synced: 15 days ago - Pushed: over 8 years ago - Stars: 67 - Forks: 15

chapmanb/cgpBattenberg Fork of cancerit/cgpBattenberg

Battenberg algorithm and associated implementation script

Language: R - Size: 29.2 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

chapmanb/biosqlweb

BioSQL web

Language: Python - Size: 3.3 MB - Last synced: about 1 year ago - Pushed: almost 15 years ago - Stars: 13 - Forks: 1

chapmanb/samtools Fork of nh13/samtools

Language: C - Size: 4.3 MB - Last synced: about 1 year ago - Pushed: over 10 years ago - Stars: 1 - Forks: 0

chapmanb/o8 Fork of lynaghk/vcf

Genetic changes we can believe in: a web based tool for variant visualization and analysis

Language: JavaScript - Size: 3.86 MB - Last synced: about 1 year ago - Pushed: about 11 years ago - Stars: 18 - Forks: 1

chapmanb/conda-recipes Fork of conda-archive/conda-recipes

build and test recipes for conda

Language: Python - Size: 1010 KB - Last synced: about 1 year ago - Pushed: about 10 years ago - Stars: 1 - Forks: 0

chapmanb/zmk-34key-split

Size: 3.02 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

chapmanb/zmk-architeuthis-dux Fork of dxmh/zmk-architeuthis-dux

ZMK keyboard firmware shield for Architeuthis Dux

Size: 19.5 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

chapmanb/dotfiles

~chapmanb dotfile organization for backup and sychronization

Language: Shell - Size: 86.9 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 3 - Forks: 0

chapmanb/sbg-cwl-runner Fork of kghose/sbg-cwl-runner

A CWL Runner for SBG platform

Language: Python - Size: 12.7 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/ipython Fork of ipython/ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

Language: Python - Size: 53.1 MB - Last synced: about 1 year ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0

chapmanb/elasticluster Fork of elasticluster/elasticluster

Language: Python - Size: 2.15 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/bioruby-vcf Fork of vcflib/bio-vcf

Smart VCF parser

Language: Ruby - Size: 535 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/freebayes Fork of freebayes/freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

Language: C++ - Size: 5.94 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1

chapmanb/bcc2020.github.io Fork of bcc2020/bcc2020.github.io

Website for #BCC2020

Language: CSS - Size: 47.2 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

chapmanb/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Language: Shell - Size: 250 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 1

chapmanb/MultiQC Fork of ewels/MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Language: Python - Size: 19.8 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 2 - Forks: 1

chapmanb/staged-recipes Fork of conda-forge/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Language: Python - Size: 35.3 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

chapmanb/In-depth-NGS-Data-Analysis-Course Fork of hbctraining/In-depth-NGS-Data-Analysis-Course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

Language: HTML - Size: 275 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

chapmanb/Platypus Fork of andyrimmer/Platypus

Platypus Variant Caller

Language: Python - Size: 53.4 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

chapmanb/arvados Fork of arvados/arvados

An open source platform for managing and analyzing biomedical big data

Language: Ruby - Size: 34.2 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

chapmanb/cnvkit Fork of etal/cnvkit

Copy number variant detection from targeted DNA sequencing

Language: Python - Size: 100 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 2

chapmanb/seqcluster Fork of lpantano/seqcluster

small RNA analysis from NGS data

Language: HTML - Size: 7.6 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/mirtop Fork of miRTop/mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming

Language: Python - Size: 947 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/bcbio.run

Idempotent, transactional runs of external command line programs

Language: Clojure - Size: 14.6 KB - Last synced: 11 days ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

chapmanb/Seq2C Fork of AstraZeneca-NGS/Seq2C

Language: Perl - Size: 237 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

chapmanb/TitanCNA Fork of gavinha/TitanCNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

Language: R - Size: 10.5 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/PureCN Fork of lima1/PureCN

Copy number calling and variant classification using targeted short read sequencing

Language: R - Size: 13.1 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/truvari Fork of ACEnglish/truvari

SVBenchmarkingTool

Language: Python - Size: 85.9 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/VarDictJava Fork of AstraZeneca-NGS/VarDictJava

VarDict Java port

Language: Java - Size: 23.5 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/dx-cwl Fork of dnanexus/dx-cwl

Import and run CWL workflows on DNAnexus (alpha)

Language: Python - Size: 119 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/workflow-service Fork of common-workflow-language/workflow-service

Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows

Language: Python - Size: 203 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

chapmanb/toil Fork of DataBiosphere/toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

Language: Python - Size: 8.57 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

chapmanb/DKFZBiasFilter Fork of DKFZ-ODCF/DKFZBiasFilter

Language: Python - Size: 180 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

chapmanb/peddy Fork of brentp/peddy

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

Language: Jupyter Notebook - Size: 39.2 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

chapmanb/smoove Fork of brentp/smoove

structural variant calling and genotyping with existing tools, but, smoothly.

Language: Go - Size: 68.4 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

chapmanb/ChromosomeMappings Fork of dpryan79/ChromosomeMappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

Size: 508 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

chapmanb/ncbi-hackathons.github.io Fork of NCBI-Hackathons/ncbi-hackathons.github.io

NCBI Hackathon Repos

Language: HTML - Size: 23.6 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

chapmanb/octopus Fork of luntergroup/octopus

Bayesian haplotype-based mutation calling

Language: C++ - Size: 126 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

chapmanb/galaxy-hub Fork of galaxyproject/galaxy-hub

Galaxy Community Hub

Language: HTML - Size: 193 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

chapmanb/deepvariant Fork of google/deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language: Python - Size: 6.38 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1

chapmanb/bazel-feedstock Fork of conda-forge/bazel-feedstock

A conda-smithy repository for bazel.

Language: Shell - Size: 10.7 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

chapmanb/sambamba Fork of biod/sambamba

Tools for working with SAM/BAM data

Language: D - Size: 2.7 MB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 2

chapmanb/pindel Fork of genome/pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

Language: C++ - Size: 89.9 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

chapmanb/gvcf_regions Fork of lijiayong/gvcf_regions

Language: Python - Size: 29.3 KB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 2 - Forks: 0

chapmanb/colormath-feedstock Fork of conda-forge/colormath-feedstock

A conda-smithy repository for colormath.

Language: Shell - Size: 9.77 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

chapmanb/gatk-1 Fork of broadinstitute/gatk

Official code repository for GATK versions 4 and up

Language: Java - Size: 133 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1

chapmanb/VariantBam Fork of walaj/VariantBam

Filtering and profiling of next-generational sequencing data using region-specific rules

Language: Makefile - Size: 445 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1

chapmanb/vcfanno Fork of brentp/vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

Language: Go - Size: 36.9 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

chapmanb/gatk Fork of broadgsa/gatk

GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

Language: Java - Size: 243 MB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 2 - Forks: 1

chapmanb/schema_salad Fork of common-workflow-language/schema_salad

Semantic Annotations for Linked Avro Data

Language: Web Ontology Language - Size: 636 KB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

chapmanb/vcfgo Fork of brentp/vcfgo

a golang library to read, write and manipulate files in the variant call format.

Language: Go - Size: 487 KB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

chapmanb/VarDict Fork of AstraZeneca-NGS/VarDict

VarDict

Language: Perl - Size: 1.07 MB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

chapmanb/zeromq-feedstock Fork of conda-forge/zeromq-feedstock

A conda-smithy repository for zeromq.

Language: Shell - Size: 41 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

chapmanb/vcf2db Fork of quinlan-lab/vcf2db

create a gemini-compatible database from a VCF

Language: Python - Size: 43 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

chapmanb/cwltool Fork of common-workflow-language/cwltool

Common Workflow Language reference implementation

Language: Web Ontology Language - Size: 2.88 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 0

chapmanb/umis Fork of vals/umis

Tools for processing UMI RNA-tag data

Language: Python - Size: 240 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

chapmanb/delly Fork of dellytools/delly

DELLY: Structural variant discovery by integrated paired-end and split-read analysis

Language: C++ - Size: 1.44 MB - Last synced: about 1 year ago - Pushed: about 10 years ago - Stars: 0 - Forks: 1

chapmanb/goleft Fork of brentp/goleft

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Language: Go - Size: 3.67 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 1

chapmanb/cwl2wdl Fork of adamstruck/cwl2wdl

Convert CWL to WDL

Language: Python - Size: 2.36 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

chapmanb/geneimpacts Fork of brentp/geneimpacts

prioritize effects of variant annotations from VEP, SnpEff, et al.

Language: Python - Size: 98.6 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

chapmanb/common-workflow-language Fork of common-workflow-language/common-workflow-language

Repository for CWL Specfications

Language: Web Ontology Language - Size: 2.22 MB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

chapmanb/cyvcf2 Fork of brentp/cyvcf2

cython + htslib == fast VCF parsing

Language: C - Size: 12.9 MB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 1

chapmanb/simple_sv_annotation Fork of mjafin/simple_sv_annotation

Simplify snpEff annotations for interesting cases

Language: Python - Size: 92.8 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 1

chapmanb/CAGe Fork of adambloniarz/CAGe

Changepoint Analysis of Genomic Reads

Language: C++ - Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

chapmanb/mypubs Fork of lpantano/mypubs

creation of methods with the purpose of tools comparison

Language: Mathematica - Size: 50.4 MB - Last synced: about 1 year ago - Pushed: about 8 years ago - Stars: 0 - Forks: 0

chapmanb/vcflib Fork of vcflib/vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

Language: C++ - Size: 1.06 MB - Last synced: about 1 year ago - Pushed: over 10 years ago - Stars: 0 - Forks: 0

chapmanb/lumpy-sv Fork of arq5x/lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

Language: C - Size: 178 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

chapmanb/linuxbrew Fork of Linuxbrew/legacy-linuxbrew

A fork of Homebrew for Linux

Language: Ruby - Size: 35.8 MB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

chapmanb/grabix Fork of arq5x/grabix

a wee tool for random access into BGZF files.

Language: C - Size: 623 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/pybedtools Fork of daler/pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

Language: Python - Size: 24.3 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/manta Fork of Illumina/manta

Structural variant and indel caller for mapped sequencing data

Language: C++ - Size: 77.5 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/rust-bio.github.io Fork of rust-bio/rust-bio.github.io

Github pages for Rust-Bio

Language: CSS - Size: 108 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/wham Fork of zeeev/wham

Structural variant detection and association testing

Language: C++ - Size: 91.6 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/svtyper Fork of hall-lab/svtyper

Bayesian genotyper for structural variants

Language: Python - Size: 272 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/cyvcf Fork of arq5x/cyvcf

A fast Python library for VCF files leveraging Cython for speed.

Language: Python - Size: 1.37 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 5 - Forks: 1

chapmanb/metasv Fork of bioinform/metasv

MetaSV: An accurate and integrative structural-variant caller for next generation sequencing

Language: Python - Size: 751 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/phylowgs Fork of morrislab/phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

Language: Python - Size: 231 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

chapmanb/oswitch Fork of wurmlab/oswitch

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

Language: Ruby - Size: 140 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

chapmanb/vcftools-cpan

cpanm ready distribution of VCFtools Perl libraries

Language: Perl - Size: 137 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago - Stars: 0 - Forks: 0

chapmanb/samblaster Fork of GregoryFaust/samblaster

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

Language: C++ - Size: 359 KB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 1

chapmanb/sciclone Fork of genome/sciclone

An R package for inferring the subclonal architecture of tumors

Language: R - Size: 13.9 MB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

chapmanb/joblib Fork of joblib/joblib

Python function as pipeline jobs.

Language: Python - Size: 2.17 MB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

chapmanb/r-var

Exploring our genomic variability

Language: Clojure - Size: 1.42 MB - Last synced: about 1 year ago - Pushed: over 12 years ago - Stars: 7 - Forks: 2

chapmanb/bio.ensembl Fork of intronic/bio.ensembl

Clojure API for Ensembl data access via JEnsembl

Language: Clojure - Size: 106 KB - Last synced: about 1 year ago - Pushed: almost 11 years ago - Stars: 1 - Forks: 0

chapmanb/python-graph Fork of pmatiello/python-graph

Automatically exported from code.google.com/p/python-graph

Language: Python - Size: 805 KB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

chapmanb/homebrew-science Fork of ahmadia/homebrew-science

Scientific formulae for the Homebrew package manager

Language: Ruby - Size: 3.9 MB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

chapmanb/PyVCF Fork of jamescasbon/PyVCF

A Variant Call Format reader for Python.

Language: Python - Size: 1.59 MB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 1

chapmanb/vt Fork of atks/vt

A tool set for short variant discovery in genetic sequence data.

Language: C - Size: 3.54 MB - Last synced: about 1 year ago - Pushed: about 9 years ago - Stars: 0 - Forks: 0

chapmanb/bioblend Fork of galaxyproject/bioblend

A python library for interacting with CloudMan and Galaxy API

Language: Python - Size: 1.7 MB - Last synced: about 1 year ago - Pushed: almost 11 years ago - Stars: 0 - Forks: 0

chapmanb/loftee Fork of konradjk/loftee

Language: Python - Size: 133 KB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

chapmanb/pysam Fork of pysam-developers/pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Language: C - Size: 8.44 MB - Last synced: about 1 year ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0