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GitHub / BodenmillerGroup / imcRtools
An R package for handling and analysing imaging mass cytometry data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BodenmillerGroup%2FimcRtools
Stars: 20
Forks: 8
Open Issues: 6
License: None
Language: R
Repo Size: 46.6 MB
Dependencies:
46
Created: over 4 years ago
Updated: about 1 month ago
Last pushed: 3 months ago
Last synced: 16 days ago
Commit Stats
Commits: 398
Authors: 8
Mean commits per author: 49.75
Development Distribution Score: 0.156
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/BodenmillerGroup/imcRtools
Topics: imc, r, single-cell, spatial
Files
Dependencies
- actions/checkout v2 composite
- actions/checkout v2 composite
- actions/cache v1 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- R >= 4.1 depends
- SpatialExperiment * depends
- BiocNeighbors * imports
- BiocParallel * imports
- DT * imports
- EBImage * imports
- MatrixGenerics * imports
- RTriangle * imports
- S4Vectors * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- abind * imports
- concaveman * imports
- cytomapper * imports
- data.table * imports
- distances * imports
- dplyr * imports
- ggplot2 * imports
- ggraph * imports
- igraph * imports
- magrittr * imports
- methods * imports
- pheatmap * imports
- readr * imports
- scuttle * imports
- sf * imports
- stats * imports
- stringr * imports
- tidygraph * imports
- tidyselect * imports
- utils * imports
- viridis * imports
- vroom * imports
- BiocStyle * suggests
- CATALYST * suggests
- grid * suggests
- knitr * suggests
- markdown * suggests
- rmarkdown * suggests
- testthat * suggests