HugoJH/galaxy | GitHub | Ecosyste.ms: Repos

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requirements.txt pypi

adal ==1.2.7
aiofiles ==0.6.0
amqp ==5.0.6
appdirs ==1.4.4
argcomplete ==1.12.3
async-exit-stack ==1.0.1
async-generator ==1.10
attmap ==0.13.0
attrs ==20.3.0
babel ==2.9.0
bagit ==1.8.1
bagit-profile ==1.3.1
bcrypt ==3.2.0
bdbag ==1.6.1
beaker ==1.11.0
billiard ==3.6.4.0
bioblend ==0.15.0
bleach ==3.3.0
boltons ==20.2.1
boto ==2.49.0
boto3 ==1.16.63
botocore ==1.19.63
bx-python ==0.8.11
cachecontrol ==0.11.7
cached-property ==1.5.2
cachetools ==4.2.2
celery ==5.0.5
certifi ==2020.12.5
cffi ==1.14.5
chardet ==4.0.0
cheetah3 ==3.2.6.post2
circus ==0.17.1
click ==7.1.2
click-didyoumean ==0.0.3
click-plugins ==1.1.1
click-repl ==0.1.6
cliff ==3.7.0
cloudauthz ==0.6.0
cloudbridge ==2.1.0
cmd2 ==1.5.0
colorama ==0.4.4
coloredlogs ==15.0
contextvars ==2.4
cryptography ==3.4.7
cwltool ==3.0.20201109103151
dataclasses ==0.8
debtcollector ==2.2.0
decorator ==5.0.7
defusedxml ==0.7.1
deprecation ==2.1.0
dictobj ==0.4
docopt ==0.6.2
docutils ==0.16
dogpile.cache ==1.1.2
ecdsa ==0.14.1
fabric3 ==1.14.post1
fastapi ==0.65.2
fastapi-utils ==0.2.1
funcsigs ==1.0.2
future ==0.18.2
galaxy-sequence-utils ==1.1.5
google-api-core ==1.26.3
google-api-python-client ==1.12.8
google-auth ==1.30.0
google-auth-httplib2 ==0.1.0
googleapis-common-protos ==1.53.0
greenlet ==1.0.0
gxformat2 ==0.15.0
h11 ==0.12.0
h5py ==3.1.0
httplib2 ==0.19.1
humanfriendly ==9.1
idna ==2.10
immutables ==0.15
importlib-metadata ==4.0.1
importlib-resources ==5.1.2
isa-rwval ==0.10.10
iso8601 ==0.1.14
isodate ==0.6.0
jmespath ==0.10.0
jsonpatch ==1.32
jsonpointer ==2.1
jsonschema ==3.2.0
keystoneauth1 ==4.3.1
kombu ==5.0.2
lagom ==1.2.0
lockfile ==0.12.2
lxml ==4.6.3
mako ==1.1.4
markdown ==3.3.4
markupsafe ==1.1.1
mercurial ==5.7.1
mistune ==0.8.4
mrcfile ==1.3.0
msgpack ==1.0.2
munch ==2.5.0
mypy-extensions ==0.4.3
netaddr ==0.8.0
netifaces ==0.10.9
networkx ==2.5
nodeenv ==1.6.0
nose ==1.3.7
numpy ==1.19.5
oauth2client ==4.1.3
oauthlib ==3.1.0
openstacksdk ==0.52.0
os-client-config ==2.1.0
os-service-types ==1.7.0
osc-lib ==2.3.1
oslo.config ==8.6.0
oslo.context ==3.2.0
oslo.i18n ==5.0.1
oslo.log ==4.4.0
oslo.serialization ==4.1.0
oslo.utils ==4.8.0
oyaml ==1.0
packaging ==20.9
paramiko ==2.7.2
parsley ==1.3
paste ==3.5.0
pastedeploy ==2.1.1
pbr ==5.6.0
prettytable ==0.7.2
prompt-toolkit ==3.0.3
protobuf ==3.15.8
prov ==1.5.1
psutil ==5.8.0
pulsar-galaxy-lib ==0.14.6
py ==1.10.0
pyasn1 ==0.4.8
pyasn1-modules ==0.2.8
pycparser ==2.20
pycryptodome ==3.10.1
pydantic ==1.8.2
pydot ==1.4.2
pyeventsystem ==0.1.0
pyfaidx ==0.5.9.5
pyinotify ==0.9.6
pyjwt ==2.1.0
pykwalify ==1.8.0
pynacl ==1.4.0
pyparsing ==2.4.7
pyperclip ==1.8.2
pyreadline ==2.1
pyreadline3 ==3.3
pyrsistent ==0.17.3
pysam ==0.16.0.1
python-dateutil ==2.8.1
python-jose ==3.2.0
python-keystoneclient ==4.1.1
python-neutronclient ==7.2.1
python-novaclient ==17.2.1
python-swiftclient ==3.10.1
python3-openid ==3.2.0
pytz ==2021.1
pyuwsgi ==2.0.19.1.post0
pyyaml ==5.4.1
pyzmq ==22.0.3
rdflib ==4.2.2
rdflib-jsonld ==0.5.0
refgenconf ==0.9.3
repoze.lru ==0.7
requests ==2.25.1
requests-oauthlib ==1.3.0
requests-toolbelt ==0.9.1
requestsexceptions ==1.4.0
rfc3986 ==1.4.0
routes ==2.5.1
rsa ==4.7.2
ruamel.yaml ==0.16.5
ruamel.yaml.clib ==0.2.2
s3transfer ==0.3.7
schema-salad ==7.1.20210316164414
setuptools-scm ==5.0.2
shellescape ==3.4.1
simplejson ==3.17.2
six ==1.15.0
social-auth-core ==3.3.0
sortedcontainers ==2.3.0
sqlalchemy ==1.4.20
sqlalchemy-migrate ==0.13.0
sqlitedict ==1.7.0
sqlparse ==0.4.1
starlette ==0.14.2
starlette-context ==0.3.2
stevedore ==3.3.0
svgwrite ==1.4.1
tempita ==0.5.2
tenacity ==7.0.0
tifffile ==2020.9.3
tornado ==6.1
tqdm ==4.60.0
typing-extensions ==3.7.4.3
tzlocal ==2.1
ubiquerg ==0.6.1
unidecode ==1.2.0
uritemplate ==3.0.1
urllib3 ==1.26.4
uvicorn ==0.13.4
vine ==5.0.0
wcwidth ==0.2.5
webencodings ==0.5.1
webob ==1.8.7
whoosh ==2.7.4
wrapt ==1.12.1
yacman ==0.8.1
zipp ==3.4.1
zipstream-new ==1.1.8

.github/workflows/api_paste.yaml actions

actions/cache v2 composite
actions/checkout v2 composite
actions/setup-python v2 composite
actions/upload-artifact v2 composite
postgres 9.6 docker

.github/workflows/converter_tests.yaml actions

actions/cache v1 composite
actions/checkout v2 composite
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.github/workflows/db_indexes.yaml actions

actions/cache v1 composite
actions/checkout v2 composite
actions/setup-python v1 composite
postgres ${{ matrix.postgresql-version }} docker

.github/workflows/dependencies.yaml actions

actions/cache v2 composite
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peter-evans/create-pull-request v3 composite

.github/workflows/docs.yaml actions

actions/cache v2 composite
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.github/workflows/first_startup.yaml actions

actions/cache v1 composite
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.github/workflows/framework.yaml actions

actions/cache v2 composite
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actions/upload-artifact v2 composite
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.github/workflows/integration.yaml actions

CodingNagger/minikube-setup-action v1.0.3 composite
actions/cache v1 composite
actions/checkout v2 composite
actions/setup-python v1 composite
actions/upload-artifact v2 composite
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.github/workflows/integration_selenium.yaml actions

actions/cache v1 composite
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actions/setup-python v1 composite
actions/upload-artifact v2 composite
mvdbeek/gha-yarn-cache master composite
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selenium/standalone-chrome 3.141.59 docker

.github/workflows/jest.yaml actions

actions/checkout v2 composite
actions/setup-node v1 composite
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.github/workflows/labels-verifier.yaml actions

actions/github-script v3 composite

.github/workflows/lint.yaml actions

actions/cache v2 composite
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.github/workflows/maintenance_bot.yaml actions

actions/github-script v3 composite
actions/labeler main composite

.github/workflows/mulled.yaml actions

actions/cache v1 composite
actions/checkout v2 composite
actions/setup-python v1 composite
actions/upload-artifact v2 composite

.github/workflows/osx_startup.yaml actions

actions/cache v1 composite
actions/checkout v2 composite
conda-incubator/setup-miniconda v2 composite

.github/workflows/performance.yaml actions

actions/cache v2 composite
actions/checkout v2 composite
actions/setup-python v2 composite
actions/upload-artifact v2 composite
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.github/workflows/selenium.yaml actions

actions/cache v2 composite
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actions/upload-artifact v2 composite
mvdbeek/gha-yarn-cache master composite
nanasess/setup-chromedriver master composite
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.github/workflows/toolshed.yaml actions

actions/cache v1 composite
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.github/workflows/unit.yaml actions

actions/cache v2 composite
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client/Dockerfile docker

digitallyseamless/nodejs-bower-grunt latest build

config/plugins/interactive_environments/cellxgene/docker/Dockerfile docker

python 3.6.8-slim build

lib/galaxy/web/proxy/js/Dockerfile docker

node 0.11.13 build

test/functional/tools/realtime/simple/Dockerfile docker

python 2.7 build

client/package.json npm

@babel/core ^7.11.1 development
@babel/helper-validator-identifier ^7.10.4 development
@babel/plugin-syntax-dynamic-import ^7.8.3 development
@babel/plugin-transform-runtime ^7.11.0 development
@babel/preset-env ^7.11.0 development
@testing-library/jest-dom ^5.11.9 development
@vue/test-utils ^1.0.3 development
amdi18n-loader ^0.9.3 development
autoprefixer ^9.8.0 development
axios-mock-adapter ^1.18.2 development
babel-core ^7.0.0-bridge.0 development
babel-eslint ^10.1.0 development
babel-jest ^26.6.3 development
babel-loader ^8.1.0 development
babel-plugin-transform-inline-environment-variables ^0.4.3 development
babel-plugin-transform-vue-template ^0.4.2 development
chai ^4.2.0 development
chokidar ^3.4.0 development
css-loader ^3.5.3 development
del ^5.1.0 development
duplicate-package-checker-webpack-plugin ^3.0.0 development
eslint ^7.25.0 development
eslint-plugin-vue ^7.9.0 development
expose-loader ^1.0.0 development
file-loader ^6.0.0 development
gulp ^4.0.2 development
ignore-loader ^0.1.2 development
imports-loader ^0.8.0 development
jest ^26.6.3 development
jest-raw-loader ^1.0.1 development
json-loader ^0.5.7 development
karma ^5.0.9 development
karma-chrome-launcher ^3.1.0 development
karma-polyfill ^1.1.0 development
karma-qunit ^4.1.1 development
karma-webpack ^4.0.2 development
mini-css-extract-plugin ^0.9.0 development
optimize-css-assets-webpack-plugin ^5.0.3 development
postcss-loader ^3.0.0 development
prettier ^2.3.0 development
qunit ^2.10.0 development
raw-loader ^4.0.1 development
sass ^1.26.5 development
sass-loader ^8.0.2 development
sinon ^9.0.2 development
store ^2.0.12 development
style-loader ^1.2.1 development
vue-jest ^3.0.6 development
vue-loader ^15.9.2 development
vue-styleguidist ^4.23.3 development
vue-template-compiler ^2.6.11 development
webpack ^4.43.0 development
webpack-cli ^3.3.11 development
webpack-dev-server ^3.11.0 development
webpack-merge ^4.2.2 development
worker-loader ^3.0.6 development
yaml-jest ^1.0.5 development
yaml-loader ^0.6.0 development
@babel/polyfill ^7.10.1
@fortawesome/fontawesome-free ^5.13.0
@fortawesome/fontawesome-svg-core ^1.2.28
@fortawesome/free-brands-svg-icons ^5.15.1
@fortawesome/free-regular-svg-icons ^5.14.0
@fortawesome/free-solid-svg-icons ^5.13.0
@fortawesome/vue-fontawesome ^0.1.9
@galaxyproject/bootstrap-tour ^0.12.1
@handsontable/vue ^2.0.0-beta1
@hirez_io/observer-spy ^2.0.0
@johmun/vue-tags-input ^2.1.0
@sentry/browser ^5.20.1
axios ^0.21.1
backbone 1.4.0
bootstrap 4.5.0
bootstrap-vue ^2.15.0
citation-js ^0.5.0-alpha.5
d3 3
date-fns ^2.21.1
decode-uri-component ^0.2.0
deep-diff ^1.0.2
deep-equal ^2.0.5
elkjs ^0.6.2
flush-promises ^1.0.2
glob ^7.1.6
handsontable ^2.0.0
imask ^6.0.5
in-viewport ^3.6.0
is-promise ^4.0.0
isotope-layout ^3.0.6
iter-tools 7.0.0-rc.0
jquery 2
jquery-migrate ~1.4
jquery-mousewheel ^3.1.13
jquery-ui ^1.12.1
jquery.complexify ^0.5.2
jquery.cookie ^1.4.1
linkifyjs ^2.1.9
markdown-it ^11.0.0
markdown-it-regexp ^0.4.0
moment 2.26.0
popper.js ^1.16.1
pouchdb ^7.2.2
pouchdb-adapter-memory ^7.2.2
pouchdb-debug ^7.2.1
pouchdb-erase ^1.0.2
pouchdb-find ^7.2.2
pouchdb-upsert ^2.2.0
proper-skip-list ^4.0.2
pyre-to-regexp ^0.0.5
regression ^2.0.1
requirejs 2.3.6
rxjs ^6.6.3
rxjs-spy ^7.5.3
rxjs-spy-devtools-plugin ^0.0.4
slugify ^1.4.0
splitpanes 2.3.6
threads ^1.6.3
toastr ^2.1.4
underscore ^1.10.2
underscore.string ^3.3.5
vue ^2.6.11
vue-infinite-scroll ^2.0.2
vue-multiselect ^2.1.0
vue-observe-visibility ^1.0.0
vue-router ^3.3.1
vue-rx ^6.2.0
vuedraggable 2.24.1
vueisotope ^3.1.2
vuex ^3.4.0
vuex-cache ^3.2.0
vuex-persist ^3.1.3

.github/workflows/api.yaml actions

actions/cache v2 composite
actions/checkout v2 composite
actions/setup-python v2 composite
actions/upload-artifact v2 composite
postgres 13 docker

config/plugins/visualizations/annotate_image/package.json npm

babel-preset-env ^1.6.1
backbone ^1.3.3
jquery ^3.3.1
jquery-contextmenu ^2.7.1
jquery.ui.position ^1.11.4
paper ^0.12.3
parcel-bundler ^1.4.1
underscore ^1.8.3

config/plugins/visualizations/chiraviz/package.json npm

copy-webpack-plugin ^5.1.1 development
css-loader ^3.4.2 development
file ^0.2.2 development
file-loader ^5.0.2 development
mini-css-extract-plugin ^0.9.0 development
script-loader ^0.7.2 development
system ^2.0.1 development
url-loader ^4.0.0 development
webpack ^4.42.1 development
webpack-cli ^3.3.11 development
bootstrap 3.3.7
font-awesome ^4.7.0
jquery 3.2.1
plotly.js ^1.52.3
underscore 1.8.3

config/plugins/visualizations/cytoscape/package.json npm

babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
cytoscape ^3.2.8
jquery ^3.1.1
parcel-bundler ^1.4.1

config/plugins/visualizations/drawrna/package.json npm

babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
drawrnajs ^1.2.6
jquery ^3.1.1
parcel-bundler ^1.4.1

config/plugins/visualizations/editor/package.json npm

css-loader ^3.4.2 development
extract-text-webpack-plugin ^3.0.2 development
file-loader ^5.0.2 development
mini-css-extract-plugin ^0.9.0 development
style-loader ^1.1.3 development
webpack ^4.41.6 development
webpack-cli ^3.3.11 development
ace-builds ^1.4.8

config/plugins/visualizations/example/package.json npm

babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^4.12.2
jquery ^3.1.1
parcel-bundler ^1.4.1
underscore ^1.8.3

config/plugins/visualizations/heatmap/heatmap_default/package.json npm

babel-preset-env ^1.6.1
backbone ^1.4.0
bootstrap ^3.3.7
d3 3
jquery ^3.5.1
parcel-bundler ^1.4.1
underscore ^1.11.0

config/plugins/visualizations/hyphyvision/package.json npm

css-loader ^3.4.2 development
expose-loader ^0.7.5 development
file-loader ^5.0.2 development
hyphy-vision 2.6.3 development
mini-css-extract-plugin ^0.9.0 development
phylotree 0.1.6 development
style-loader ^1.1.3 development
webpack ^4.41.6 development
webpack-cli ^3.3.11 development
fbjs ^1.0.0
underscore ^1.9.2

config/plugins/visualizations/jqplot/jqplot_bar/package.json npm

babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^4.12.2
jqplot-exported ^1.0.9-pm.9
jquery ^3.1.1
parcel-bundler ^1.4.1

config/plugins/visualizations/media_player/package.json npm

plyr ^3.6.2

config/plugins/visualizations/msa/package.json npm

babel-plugin-transform-export-extensions ^6.22.0
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
es2015 0.0.0
jquery ^3.1.1
msa ^1.0.3
parcel-bundler ^1.4.1

config/plugins/visualizations/mvpapp/package.json npm

clean-webpack-plugin ^3.0.0 development
copy-webpack-plugin ^6.0.3 development
css-loader ^3.4.2 development
extract-text-webpack-plugin ^3.0.2 development
file ^0.2.2 development
file-loader ^5.0.2 development
mini-css-extract-plugin ^0.9.0 development
script-loader ^0.7.2 development
style-loader ^1.2.0 development
system ^2.0.1 development
url-loader ^4.0.0 development
webpack ^4.42.1 development
webpack-cli ^3.3.11 development
bootstrap 3
igv ^2.6.6

config/plugins/visualizations/ngl/package.json npm

babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
jquery ^3.1.1
ngl ^0.10.4
parcel-bundler ^1.4.1

config/plugins/visualizations/nora/package.json npm

@galaxyproject/nora 1.1.2
cpy-cli ^3.1.1

config/plugins/visualizations/nvd3/nvd3_bar/package.json npm

babel-core ^6.26.3 development
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^3.4.5
jquery ^3.3.1
nvd3 ^1.8.6
parcel-bundler ^1.4.1
underscore ^1.8.3

config/plugins/visualizations/openlayers/package.json npm

axios ^0.19.0
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
file-saver ^2.0.2
jquery ^3.3.1
jszip ^3.2.2
jszip-utils ^0.1.0
ol ^5.3.3
parcel-bundler ^1.4.1
proj4 ^2.5.0
shpjs ^3.4.3
underscore ^1.8.3

config/plugins/visualizations/openseadragon/package.json npm

cpy-cli ^3.1.1
openseadragon ^2.4.2

config/plugins/visualizations/phylocanvas/package.json npm

babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
jquery ^3.1.1
parcel-bundler ^1.4.1
phylocanvas ^2.8.1

config/plugins/visualizations/pv/package.json npm

bio-pv ^1.8.1
parcel-bundler ^1.12.4

config/plugins/visualizations/scatterplot/package.json npm

babel-core ^6.26.3 development
babel-plugin-auto-import ^0.7.1
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^3.5.17
jquery ^3.2.1
jquery-ui-bundle ^1.12.1-migrate
parcel-bundler ^1.6.2
underscore ^1.8.3

config/plugins/visualizations/venn/package.json npm

babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^3.4.5
jquery ^3.1.1
parcel-bundler ^1.4.1

config/plugins/webhooks/demo/tour_generator/package.json npm

backbone ^1.3.3
parcel-bundler ^1.10.3
toastr ^2.1.4

lib/galaxy/web/proxy/js/package.json npm

commander ~2.20.3
eventemitter3 3.1.2
http-proxy 1.18.1
node-watch 0.7.0
sqlite3 4.2.0

lib/galaxy/dependencies/conditional-requirements.txt pypi

lib/galaxy/dependencies/dev-requirements.txt pypi

adal ==1.2.7 development
aiofiles ==0.6.0 development
alabaster ==0.7.12 development
amqp ==5.0.6 development
appdirs ==1.4.4 development
argcomplete ==1.12.3 development
async-exit-stack ==1.0.1 development
async-generator ==1.10 development
atomicwrites ==1.4.0 development
attmap ==0.13.0 development
attrs ==20.3.0 development
babel ==2.9.0 development
bagit ==1.8.1 development
bagit-profile ==1.3.1 development
bcrypt ==3.2.0 development
bdbag ==1.6.1 development
beaker ==1.11.0 development
billiard ==3.6.4.0 development
bioblend ==0.15.0 development
bleach ==3.3.0 development
boltons ==20.2.1 development
boto ==2.49.0 development
boto3 ==1.16.63 development
botocore ==1.19.63 development
bx-python ==0.8.11 development
cachecontrol ==0.11.7 development
cached-property ==1.5.2 development
cachetools ==4.2.2 development
celery ==5.0.5 development
certifi ==2020.12.5 development
cffi ==1.14.5 development
chardet ==4.0.0 development
cheetah3 ==3.2.6.post2 development
circus ==0.17.1 development
click ==7.1.2 development
click-didyoumean ==0.0.3 development
click-plugins ==1.1.1 development
click-repl ==0.1.6 development
cliff ==3.7.0 development
cloudauthz ==0.6.0 development
cloudbridge ==2.1.0 development
cmd2 ==1.5.0 development
colorama ==0.4.4 development
coloredlogs ==15.0 development
commonmark ==0.9.1 development
contextvars ==2.4 development
coverage ==5.5 development
cryptography ==3.4.7 development
cwltool ==3.0.20201109103151 development
dataclasses ==0.8 development
debtcollector ==2.2.0 development
decorator ==5.0.7 development
defusedxml ==0.7.1 development
deprecated ==1.2.12 development
deprecation ==2.1.0 development
dictobj ==0.4 development
docopt ==0.6.2 development
docutils ==0.16 development
dogpile.cache ==1.1.2 development
ecdsa ==0.14.1 development
fabric3 ==1.14.post1 development
fastapi ==0.65.2 development
fastapi-utils ==0.2.1 development
fluent-logger ==0.10.0 development
funcsigs ==1.0.2 development
future ==0.18.2 development
galaxy-sequence-utils ==1.1.5 development
google-api-core ==1.26.3 development
google-api-python-client ==1.12.8 development
google-auth ==1.30.0 development
google-auth-httplib2 ==0.1.0 development
googleapis-common-protos ==1.53.0 development
greenlet ==1.0.0 development
gunicorn ==20.1.0 development
gxformat2 ==0.15.0 development
h11 ==0.12.0 development
h5py ==3.1.0 development
httpcore ==0.13.0 development
httplib2 ==0.19.1 development
httpx ==0.18.0 development
humanfriendly ==9.1 development
idna ==2.10 development
imagesize ==1.2.0 development
immutables ==0.15 development
importlib-metadata ==4.0.1 development
importlib-resources ==5.1.2 development
iniconfig ==1.1.1 development
isa-rwval ==0.10.10 development
iso8601 ==0.1.14 development
isodate ==0.6.0 development
jinja2 ==2.11.3 development
jmespath ==0.10.0 development
jsonpatch ==1.32 development
jsonpointer ==2.1 development
jsonschema ==3.2.0 development
keystoneauth1 ==4.3.1 development
kombu ==5.0.2 development
lagom ==1.2.0 development
lockfile ==0.12.2 development
lxml ==4.6.3 development
mako ==1.1.4 development
markdown ==3.3.4 development
markdown-it-reporter ==0.0.2 development
markupsafe ==1.1.1 development
mercurial ==5.7.1 development
mirakuru ==2.3.0 development
mistune ==0.8.4 development
mrcfile ==1.3.0 development
msgpack ==1.0.2 development
munch ==2.5.0 development
mypy-extensions ==0.4.3 development
netaddr ==0.8.0 development
netifaces ==0.10.9 development
networkx ==2.5 development
nodeenv ==1.6.0 development
nose ==1.3.7 development
nosehtml ==0.4.6 development
numpy ==1.19.5 development
oauth2client ==4.1.3 development
oauthlib ==3.1.0 development
openstacksdk ==0.52.0 development
os-client-config ==2.1.0 development
os-service-types ==1.7.0 development
osc-lib ==2.3.1 development
oslo.config ==8.6.0 development
oslo.context ==3.2.0 development
oslo.i18n ==5.0.1 development
oslo.log ==4.4.0 development
oslo.serialization ==4.1.0 development
oslo.utils ==4.8.0 development
oyaml ==1.0 development
packaging ==20.9 development
paramiko ==2.7.2 development
parsley ==1.3 development
paste ==3.5.0 development
pastedeploy ==2.1.1 development
pbr ==5.6.0 development
pluggy ==0.13.1 development
port-for ==0.4 development
prettytable ==0.7.2 development
prompt-toolkit ==3.0.3 development
protobuf ==3.15.8 development
prov ==1.5.1 development
psutil ==5.8.0 development
pulsar-galaxy-lib ==0.14.6 development
py ==1.10.0 development
pyasn1 ==0.4.8 development
pyasn1-modules ==0.2.8 development
pycparser ==2.20 development
pycryptodome ==3.10.1 development
pydantic ==1.8.2 development
pydot ==1.4.2 development
pyeventsystem ==0.1.0 development
pyfaidx ==0.5.9.5 development
pygithub ==1.55 development
pygments ==2.8.1 development
pyinotify ==0.9.6 development
pyjwt ==2.1.0 development
pykwalify ==1.8.0 development
pynacl ==1.4.0 development
pyparsing ==2.4.7 development
pyperclip ==1.8.2 development
pyreadline ==2.1 development
pyreadline3 ==3.3 development
pyrsistent ==0.17.3 development
pysam ==0.16.0.1 development
pytest ==6.2.3 development
pytest-asyncio ==0.15.1 development
pytest-cov ==2.11.1 development
pytest-html ==3.1.1 development
pytest-json-report ==1.2.4 development
pytest-metadata ==1.11.0 development
pytest-mock ==3.6.0 development
pytest-postgresql ==2.6.1 development
pytest-pythonpath ==0.7.3 development
pytest-shard ==0.1.2 development
python-dateutil ==2.8.1 development
python-irodsclient ==1.0.0 development
python-jose ==3.2.0 development
python-keystoneclient ==4.1.1 development
python-neutronclient ==7.2.1 development
python-novaclient ==17.2.1 development
python-swiftclient ==3.10.1 development
python3-openid ==3.2.0 development
pytz ==2021.1 development
pyuwsgi ==2.0.19.1.post0 development
pyyaml ==5.4.1 development
pyzmq ==22.0.3 development
rdflib ==4.2.2 development
rdflib-jsonld ==0.5.0 development
recommonmark ==0.7.1 development
refgenconf ==0.9.3 development
repoze.lru ==0.7 development
requests ==2.25.1 development
requests-oauthlib ==1.3.0 development
requests-toolbelt ==0.9.1 development
requestsexceptions ==1.4.0 development
responses ==0.13.3 development
rfc3986 ==1.4.0 development
routes ==2.5.1 development
rsa ==4.7.2 development
ruamel.yaml ==0.16.5 development
ruamel.yaml.clib ==0.2.2 development
s3transfer ==0.3.7 development
schema-salad ==7.1.20210316164414 development
selenium ==3.141.0 development
setuptools-scm ==5.0.2 development
shellescape ==3.4.1 development
simplejson ==3.17.2 development
six ==1.15.0 development
sniffio ==1.2.0 development
snowballstemmer ==2.1.0 development
social-auth-core ==3.3.0 development
sortedcontainers ==2.3.0 development
sphinx ==3.5.4 development
sphinx-markdown-tables ==0.0.15 development
sphinx-rtd-theme ==0.5.2 development
sphinxcontrib-applehelp ==1.0.2 development
sphinxcontrib-devhelp ==1.0.2 development
sphinxcontrib-htmlhelp ==1.0.3 development
sphinxcontrib-jsmath ==1.0.1 development
sphinxcontrib-qthelp ==1.0.3 development
sphinxcontrib-serializinghtml ==1.1.4 development
sqlalchemy ==1.4.20 development
sqlalchemy-migrate ==0.13.0 development
sqlitedict ==1.7.0 development
sqlparse ==0.4.1 development
starlette ==0.14.2 development
starlette-context ==0.3.2 development
statsd ==3.3.0 development
stevedore ==3.3.0 development
svgwrite ==1.4.1 development
tempita ==0.5.2 development
tenacity ==7.0.0 development
testfixtures ==6.17.1 development
tifffile ==2020.9.3 development
toml ==0.10.2 development
tornado ==6.1 development
tqdm ==4.60.0 development
twill ==3.0 development
typing-extensions ==3.7.4.3 development
tzlocal ==2.1 development
ubiquerg ==0.6.1 development
unidecode ==1.2.0 development
uritemplate ==3.0.1 development
urllib3 ==1.26.4 development
uvicorn ==0.13.4 development
vine ==5.0.0 development
watchdog ==2.0.3 development
wcwidth ==0.2.5 development
webencodings ==0.5.1 development
webob ==1.8.7 development
whoosh ==2.7.4 development
wrapt ==1.12.1 development
xmlrunner ==1.7.7 development
yacman ==0.8.1 development
zipp ==3.4.1 development
zipstream-new ==1.1.8 development

lib/galaxy/dependencies/lint-requirements.txt pypi

lib/galaxy/dependencies/pinned-lint-requirements.txt pypi

attrs ==20.3.0
flake8 ==3.9.1
flake8-bugbear ==21.4.3
flake8-import-order ==0.18.1
importlib-metadata ==4.0.1
mccabe ==0.6.1
mypy ==0.812
mypy-extensions ==0.4.3
pycodestyle ==2.7.0
pyflakes ==2.3.1
typed-ast ==1.4.3
typing-extensions ==3.7.4.3
zipp ==3.4.1

lib/galaxy/dependencies/pinned-requirements.txt pypi

adal ==1.2.7
aiofiles ==0.6.0
amqp ==5.0.6
appdirs ==1.4.4
argcomplete ==1.12.3
async-exit-stack ==1.0.1
async-generator ==1.10
attmap ==0.13.0
attrs ==20.3.0
babel ==2.9.0
bagit ==1.8.1
bagit-profile ==1.3.1
bcrypt ==3.2.0
bdbag ==1.6.1
beaker ==1.11.0
billiard ==3.6.4.0
bioblend ==0.15.0
bleach ==3.3.0
boltons ==20.2.1
boto ==2.49.0
boto3 ==1.16.63
botocore ==1.19.63
bx-python ==0.8.11
cachecontrol ==0.11.7
cached-property ==1.5.2
cachetools ==4.2.2
celery ==5.0.5
certifi ==2020.12.5
cffi ==1.14.5
chardet ==4.0.0
cheetah3 ==3.2.6.post2
circus ==0.17.1
click ==7.1.2
click-didyoumean ==0.0.3
click-plugins ==1.1.1
click-repl ==0.1.6
cliff ==3.7.0
cloudauthz ==0.6.0
cloudbridge ==2.1.0
cmd2 ==1.5.0
colorama ==0.4.4
coloredlogs ==15.0
contextvars ==2.4
cryptography ==3.4.7
cwltool ==3.0.20201109103151
dataclasses ==0.8
debtcollector ==2.2.0
decorator ==5.0.7
defusedxml ==0.7.1
deprecation ==2.1.0
dictobj ==0.4
docopt ==0.6.2
docutils ==0.16
dogpile.cache ==1.1.2
ecdsa ==0.14.1
fabric3 ==1.14.post1
fastapi ==0.65.2
fastapi-utils ==0.2.1
funcsigs ==1.0.2
future ==0.18.2
galaxy-sequence-utils ==1.1.5
google-api-core ==1.26.3
google-api-python-client ==1.12.8
google-auth ==1.30.0
google-auth-httplib2 ==0.1.0
googleapis-common-protos ==1.53.0
greenlet ==1.0.0
gxformat2 ==0.15.0
h11 ==0.12.0
h5py ==3.1.0
httplib2 ==0.19.1
humanfriendly ==9.1
idna ==2.10
immutables ==0.15
importlib-metadata ==4.0.1
importlib-resources ==5.1.2
isa-rwval ==0.10.10
iso8601 ==0.1.14
isodate ==0.6.0
jmespath ==0.10.0
jsonpatch ==1.32
jsonpointer ==2.1
jsonschema ==3.2.0
keystoneauth1 ==4.3.1
kombu ==5.0.2
lagom ==1.2.0
lockfile ==0.12.2
lxml ==4.6.3
mako ==1.1.4
markdown ==3.3.4
markupsafe ==1.1.1
mercurial ==5.7.1
mistune ==0.8.4
mrcfile ==1.3.0
msgpack ==1.0.2
munch ==2.5.0
mypy-extensions ==0.4.3
netaddr ==0.8.0
netifaces ==0.10.9
networkx ==2.5
nodeenv ==1.6.0
nose ==1.3.7
numpy ==1.19.5
oauth2client ==4.1.3
oauthlib ==3.1.0
openstacksdk ==0.52.0
os-client-config ==2.1.0
os-service-types ==1.7.0
osc-lib ==2.3.1
oslo.config ==8.6.0
oslo.context ==3.2.0
oslo.i18n ==5.0.1
oslo.log ==4.4.0
oslo.serialization ==4.1.0
oslo.utils ==4.8.0
oyaml ==1.0
packaging ==20.9
paramiko ==2.7.2
parsley ==1.3
paste ==3.5.0
pastedeploy ==2.1.1
pbr ==5.6.0
prettytable ==0.7.2
prompt-toolkit ==3.0.3
protobuf ==3.15.8
prov ==1.5.1
psutil ==5.8.0
pulsar-galaxy-lib ==0.14.6
py ==1.10.0
pyasn1 ==0.4.8
pyasn1-modules ==0.2.8
pycparser ==2.20
pycryptodome ==3.10.1
pydantic ==1.8.2
pydot ==1.4.2
pyeventsystem ==0.1.0
pyfaidx ==0.5.9.5
pyinotify ==0.9.6
pyjwt ==2.1.0
pykwalify ==1.8.0
pynacl ==1.4.0
pyparsing ==2.4.7
pyperclip ==1.8.2
pyreadline ==2.1
pyreadline3 ==3.3
pyrsistent ==0.17.3
pysam ==0.16.0.1
python-dateutil ==2.8.1
python-jose ==3.2.0
python-keystoneclient ==4.1.1
python-neutronclient ==7.2.1
python-novaclient ==17.2.1
python-swiftclient ==3.10.1
python3-openid ==3.2.0
pytz ==2021.1
pyuwsgi ==2.0.19.1.post0
pyyaml ==5.4.1
pyzmq ==22.0.3
rdflib ==4.2.2
rdflib-jsonld ==0.5.0
refgenconf ==0.9.3
repoze.lru ==0.7
requests ==2.25.1
requests-oauthlib ==1.3.0
requests-toolbelt ==0.9.1
requestsexceptions ==1.4.0
rfc3986 ==1.4.0
routes ==2.5.1
rsa ==4.7.2
ruamel.yaml ==0.16.5
ruamel.yaml.clib ==0.2.2
s3transfer ==0.3.7
schema-salad ==7.1.20210316164414
setuptools-scm ==5.0.2
shellescape ==3.4.1
simplejson ==3.17.2
six ==1.15.0
social-auth-core ==3.3.0
sortedcontainers ==2.3.0
sqlalchemy ==1.4.20
sqlalchemy-migrate ==0.13.0
sqlitedict ==1.7.0
sqlparse ==0.4.1
starlette ==0.14.2
starlette-context ==0.3.2
stevedore ==3.3.0
svgwrite ==1.4.1
tempita ==0.5.2
tenacity ==7.0.0
tifffile ==2020.9.3
tornado ==6.1
tqdm ==4.60.0
typing-extensions ==3.7.4.3
tzlocal ==2.1
ubiquerg ==0.6.1
unidecode ==1.2.0
uritemplate ==3.0.1
urllib3 ==1.26.4
uvicorn ==0.13.4
vine ==5.0.0
wcwidth ==0.2.5
webencodings ==0.5.1
webob ==1.8.7
whoosh ==2.7.4
wrapt ==1.12.1
yacman ==0.8.1
zipp ==3.4.1
zipstream-new ==1.1.8

packages/app/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/app/requirements.txt pypi

packages/app/test-requirements.txt pypi

pytest * test

packages/auth/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/auth/requirements.txt pypi

galaxy-data *

packages/auth/test-requirements.txt pypi

pytest * test

packages/containers/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/containers/requirements.txt pypi

galaxy-util *
requests *

packages/containers/test-requirements.txt pypi

pytest * test

packages/data/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/data/requirements.txt pypi

packages/data/test-requirements.txt pypi

pytest * test

packages/job_execution/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/job_execution/requirements.txt pypi

galaxy-data *

packages/job_execution/test-requirements.txt pypi

pytest * test

packages/job_metrics/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/job_metrics/requirements.txt pypi

galaxy-util *

packages/job_metrics/test-requirements.txt pypi

pytest * test

packages/meta/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/meta/test-requirements.txt pypi

pytest * test

packages/objectstore/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/objectstore/requirements.txt pypi

galaxy-util *
pyyaml *

packages/objectstore/test-requirements.txt pypi

pytest * test

packages/package-dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/selenium/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/selenium/requirements.txt pypi

galaxy-util *
selenium *

packages/selenium/test-requirements.txt pypi

pytest * test

packages/test_api/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/test_api/requirements.txt pypi

galaxy-test-base * test

packages/test_api/test-requirements.txt pypi

pytest * test

packages/test_base/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/test_base/requirements.txt pypi

galaxy-data * test
nose * test
pytest * test

packages/test_base/test-requirements.txt pypi

pytest * test

packages/test_driver/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/test_driver/requirements.txt pypi

galaxy-app * test
galaxy-data * test
galaxy-test-base * test
galaxy-tool-util * test
galaxy-util * test
galaxy-web-framework * test
galaxy-webapps * test
nose * test
pytest * test
pyyaml * test
six * test

packages/test_driver/test-requirements.txt pypi

pytest * test

packages/test_selenium/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/test_selenium/requirements.txt pypi

galaxy-test-base * test

packages/test_selenium/test-requirements.txt pypi

pytest * test

packages/tool_util/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/tool_util/requirements.txt pypi

galaxy-containers *
galaxy-util >=20.1.0.dev0
lxml *

packages/tool_util/test-requirements.txt pypi

pytest * test
pytest-mock * test

packages/util/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/util/requirements.txt pypi

packages/util/test-requirements.txt pypi

pytest <6.1 test
responses * test

packages/web_framework/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/web_framework/requirements.txt pypi

packages/web_framework/test-requirements.txt pypi

pytest * test

packages/web_stack/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/web_stack/requirements.txt pypi

SQLAlchemy >=1.4.20,<2
galaxy-util *

packages/web_stack/test-requirements.txt pypi

pytest * test

packages/webapps/dev-requirements.txt pypi

mypy * development
sphinx * development
twine * development
wheel * development

packages/webapps/requirements.txt pypi

packages/webapps/test-requirements.txt pypi

pytest * test

pyproject.toml pypi

NoseHTML * develop
Sphinx * develop
fluent-logger * develop
gunicorn * develop
httpx * develop
lxml !=4.2.2 develop
markdown-it-reporter * develop
pygithub >=1.54.1 develop
pytest * develop
pytest-asyncio * develop
pytest-cov * develop
pytest-html * develop
pytest-json-report * develop
pytest-mock * develop
pytest-postgresql * develop
pytest-pythonpath * develop
pytest-shard * develop
python-irodsclient * develop
recommonmark * develop
responses * develop
selenium * develop
sphinx_markdown_tables * develop
sphinx_rtd_theme * develop
statsd * develop
testfixtures * develop
twill * develop
watchdog * develop
Babel *
Beaker 1.11.0
Cheetah3 *
Fabric3 *
Mako *
Markdown *
MarkupSafe *
Mercurial *
Parsley *
Paste *
PyYAML *
Routes *
SQLAlchemy >=1.4.20,<2
WebOb *
Whoosh *
aiofiles *
async-exit-stack *
async-generator *
bdbag *
bioblend *
bleach *
boltons *
boto *
bx-python *
celery *
circus *
cloudauthz ==0.6.0
cloudbridge *
contextvars *
cwltool ==3.0.20201109103151
dictobj *
docutils !=0.17, !=0.17.1
fastapi >=0.65.2
fastapi-utils *
future *
galaxy_sequence_utils *
gxformat2 *
h5py !=2.7.0, !=2.7.1
isa-rwval *
kombu *
lagom <1.2.1
mrcfile *
nodeenv *
nose *
numpy *
paramiko *
psutil *
pulsar-galaxy-lib >=0.14.5
pycryptodome *
pykwalify *
pyparsing *
pysam *
python ^3.6
pyuwsgi *
refgenconf >=0.7.0, <0.10.0
requests *
social-auth-core ==3.3.0
sortedcontainers *
sqlalchemy-migrate *
sqlitedict *
sqlparse *
starlette *
starlette-context *
svgwrite *
tifffile <=2020.9.3
uvicorn *
zipstream-new *

client/yarn.lock npm

2123 dependencies

Ecosyste.ms: Repos

GitHub / HugoJH / galaxy

Files

Dependencies