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GitHub / Ken-Lau-Lab / spatial_CRC_atlas
Code to reproduce results from Heiser, et al. (2023)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Ken-Lau-Lab%2Fspatial_CRC_atlas
Stars: 1
Forks: 1
Open Issues: 2
License: mit
Language: Jupyter Notebook
Repo Size: 240 MB
Dependencies:
215
Created: about 1 year ago
Updated: about 1 year ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Files
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Readme
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Dependencies
requirements.txt
pypi
- Babel ==2.10.3
- HeapDict ==1.0.1
- Jinja2 ==3.1.2
- Mako ==1.2.4
- Markdown ==3.4.3
- MarkupSafe ==2.1.1
- PIMS ==0.6.0
- Pillow ==9.1.1
- Pint ==0.19.2
- PyOpenGL ==3.1.6
- PyVCF ==0.6.8
- PyWavelets ==1.3.0
- PyYAML ==6.0
- Pygments ==2.12.0
- QtPy ==2.1.0
- Send2Trash ==1.8.0
- Sphinx ==5.0.2
- aiohttp ==3.8.1
- aiosignal ==1.2.0
- alabaster ==0.7.12
- anndata ==0.8.0
- appdirs ==1.4.4
- argon2-cffi ==21.3.0
- argon2-cffi-bindings ==21.2.0
- asciitree ==0.3.3
- asttokens ==2.0.5
- async-timeout ==4.0.2
- attrs ==21.4.0
- backcall ==0.2.0
- backports.zoneinfo ==0.2.1
- beautifulsoup4 ==4.11.1
- bleach ==5.0.0
- build ==0.8.0
- cachey ==0.2.1
- certifi ==2022.5.18.1
- cffi ==1.15.0
- charset-normalizer ==2.0.12
- click ==8.1.3
- cloudpickle ==2.1.0
- colorcet ==3.0.1
- colormath ==3.0.0
- commonmark ==0.9.1
- contourpy ==1.1.0
- cycler ==0.11.0
- dask ==2022.5.2
- dask-image ==2021.12.0
- datacache ==1.1.5
- debugpy ==1.6.0
- decorator ==5.1.1
- defusedxml ==0.7.1
- docrep ==0.3.2
- docstring-parser ==0.14.1
- docutils ==0.18.1
- dropkick ==1.2.6
- emptydrops ==0.0.5
- entrypoints ==0.4
- executing ==0.8.3
- fa2 ==0.3.5
- fastcluster ==1.2.6
- fasteners ==0.17.3
- fastjsonschema ==2.15.3
- fonttools ==4.33.3
- freetype-py ==2.3.0
- frozenlist ==1.3.0
- fsspec ==2022.5.0
- gtfparse ==1.2.1
- h5py ==3.7.0
- hsluv ==5.0.3
- idna ==3.3
- igraph ==0.9.10
- imagecodecs ==2022.2.22
- imageio ==2.19.2
- imagesize ==1.4.1
- importlib-metadata ==4.12.0
- importlib-resources ==5.7.1
- infercnvpy ==0.1.dev94
- inflect ==5.6.0
- ipykernel ==6.13.0
- ipython ==8.3.0
- ipython-genutils ==0.2.0
- ipywidgets ==7.7.0
- jedi ==0.18.1
- joblib ==1.1.0
- jsonschema ==4.5.1
- jupyter ==1.0.0
- jupyter-client ==7.3.1
- jupyter-console ==6.4.3
- jupyter-core ==4.10.0
- jupyterlab-pygments ==0.2.2
- jupyterlab-widgets ==1.1.0
- kiwisolver ==1.4.2
- leidenalg ==0.8.10
- llvmlite ==0.38.1
- locket ==1.0.0
- loompy ==3.0.7
- lz4 ==4.0.1
- magicgui ==0.5.1
- matplotlib ==3.7.1
- matplotlib-inline ==0.1.3
- matplotlib-scalebar ==0.8.1
- matplotlib-venn ==0.11.7
- memoized-property ==1.0.3
- mistune ==0.8.4
- mock ==4.0.3
- multidict ==6.0.2
- mycolorpy ==1.5.1
- napari ==0.4.16
- napari-console ==0.0.4
- napari-plugin-engine ==0.2.0
- napari-svg ==0.1.6
- natsort ==8.1.0
- nbclient ==0.6.3
- nbconvert ==6.5.0
- nbformat ==5.4.0
- nest-asyncio ==1.5.5
- networkx ==2.8.2
- notebook ==6.4.11
- npe2 ==0.5.1
- numba ==0.55.2
- numcodecs ==0.9.1
- numpy ==1.22.4
- numpy-groupies ==0.9.16
- numpydoc ==1.4.0
- omnipath ==1.0.5
- opencv-python ==4.6.0.66
- packaging ==21.3
- pandas ==1.4.2
- pandocfilters ==1.5.0
- param ==1.12.2
- parso ==0.8.3
- partd ==1.2.0
- patsy ==0.5.2
- pdoc3 ==0.10.0
- pep517 ==0.12.0
- pexpect ==4.8.0
- pickleshare ==0.7.5
- progressbar33 ==2.4
- prometheus-client ==0.14.1
- prompt-toolkit ==3.0.29
- psutil ==5.9.1
- psygnal ==0.3.5
- ptyprocess ==0.7.0
- pure-eval ==0.2.2
- pycparser ==2.21
- pyct ==0.4.8
- pydantic ==1.9.1
- pyensembl ==2.0.0
- pynndescent ==0.5.7
- pyparsing ==3.0.9
- pyreadr ==0.4.4
- pyrsistent ==0.18.1
- python-dateutil ==2.8.2
- python-igraph ==0.9.10
- pytoml ==0.1.21
- pytomlpp ==1.0.11
- pytz ==2022.1
- pytz-deprecation-shim ==0.1.0.post0
- pyzmq ==23.0.0
- qtconsole ==5.3.0
- requests ==2.27.1
- rich ==12.4.4
- rpy2 ==3.5.2
- scanpy ==1.9.3
- scikit-image ==0.19.2
- scikit-learn ==1.1.1
- scipy ==1.8.1
- scvelo ==0.2.4
- seaborn ==0.11.2
- serializable ==0.2.1
- session-info ==1.0.0
- setuptools-scm ==7.0.2
- simplejson ==3.17.6
- six ==1.16.0
- slicerator ==1.1.0
- snowballstemmer ==2.2.0
- soupsieve ==2.3.2.post1
- sphinxcontrib-applehelp ==1.0.2
- sphinxcontrib-devhelp ==1.0.2
- sphinxcontrib-htmlhelp ==2.0.0
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.3
- sphinxcontrib-serializinghtml ==1.1.5
- squidpy ==1.2.2
- stack-data ==0.2.0
- statsmodels ==0.13.2
- stdlib-list ==0.8.0
- superqt ==0.3.3
- terminado ==0.15.0
- texttable ==1.6.4
- threadpoolctl ==3.1.0
- tifffile ==2022.5.4
- tinycss2 ==1.1.1
- tinytimer ==0.0.0
- tomli ==2.0.1
- toolz ==0.11.2
- tornado ==6.1
- tqdm ==4.64.0
- traitlets ==5.2.1.post0
- typechecks ==0.1.0
- typer ==0.5.0
- typing-extensions ==4.2.0
- tzdata ==2022.1
- tzlocal ==4.2
- umap-learn ==0.5.3
- urllib3 ==1.26.9
- validators ==0.19.0
- vispy ==0.10.0
- wcwidth ==0.2.5
- webencodings ==0.5.1
- widgetsnbextension ==3.6.0
- wrapt ==1.14.1
- xarray ==2022.3.0
- yarl ==1.7.2
- zarr ==2.11.3
- zipp ==3.8.0