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GitHub / RivuletStudio / rivuletpy
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RivuletStudio%2Frivuletpy
Stars: 64
Forks: 17
Open Issues: 8
License: bsd-3-clause
Language: Python
Repo Size: 1.21 MB
Dependencies:
12
Created: almost 8 years ago
Updated: 2 months ago
Last pushed: over 1 year ago
Last synced: 26 days ago
Topics: airways, arteries, centerline, curvilinear-coordinates, image-processing, medical-image-processing, medical-imaging, morphology, neuroinformatics, neuron, python, rivulet2-algorithm, tracing
Files
Dependencies
- Cython ^0.29.32
- SimpleITK ^2.2.0
- matplotlib ^3.6.0
- nibabel ^4.0.2
- numpy ^1.23.3
- pyglet ^1.5.27
- pylibtiff ^0.4.4
- python >=3.8, <3.11
- scikit-fmm ^2022.8.15
- scikit-image >0.18, <=0.19.3
- scipy ^1.9.1
- tqdm ^4.64.1