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GitHub / arvkevi / ezancestry
Easy genetic ancestry predictions in Python
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arvkevi%2Fezancestry
Stars: 56
Forks: 11
Open Issues: 5
License: mit
Language: Jupyter Notebook
Repo Size: 25 MB
Dependencies:
146
Created: about 4 years ago
Updated: 26 days ago
Last pushed: 26 days ago
Last synced: 26 days ago
Topics: ancestry, data-visualization, dimensionality-reduction, genomics, genomics-visualization, genotypes, personal-genomics, streamlit
Files
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Readme
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Dependencies
pyproject.toml
pypi
- pytest ^6.2.5 develop
- pytest-cov ^3.0.0 develop
- pytest-json-report ^1.4.1 develop
- cmake ^3.21.2
- cyvcf2 >=0.30.11,<=0.30.14
- loguru ^0.5.3
- numpy ^1.21.2
- pandas ^1.3.2
- plotly ^5.3.1
- python >=3.7.1,<3.11
- scikit-learn ^0.24.2
- snps ^2.3.0
- streamlit ^0.87.0
- typer ^0.4.0
- umap-learn ^0.5.1
.github/workflows/ci.yml
actions
- actions/checkout v2 composite
- actions/setup-python v2 composite
- altair <5
- ezancestry ==0.1.0
- loguru ==0.5.3
- matplotlib ==3.7.0
- numpy ==1.22.0
- pandas ==1.3.2
- plotly >=5.3.1
- pysam ==0.22.0
- scikit-learn >=1.3.1
- snps >=2.3.0
- streamlit >=1.0.1
- typer >=0.8.0