Ecosyste.ms: Repos
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GitHub / bgruening / galaxy
Data intensive biology for everyone.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bgruening%2Fgalaxy
Fork of galaxyproject/galaxy
Stars: 2
Forks: 3
Open Issues: 1
License: other
Language: Python
Repo Size: 647 MB
Dependencies:
2,639
Created: about 9 years ago
Updated: over 2 years ago
Last pushed: 22 days ago
Last synced: 22 days ago
Files
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Readme
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Dependencies
requirements.txt
pypi
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- tensorflow ==2.7.2
- total-perspective-vortex <2
- watchdog *
- weasyprint *
- aiohttp ==3.8.3 development
- aiosignal ==1.2.0 development
- alabaster ==0.7.12 development
- amqp ==5.1.1 development
- anyio ==3.6.1 development
- ase ==3.22.1 development
- async-generator ==1.10 development
- async-timeout ==4.0.2 development
- asynctest ==0.13.0 development
- attrs ==22.1.0 development
- babel ==2.10.3 development
- billiard ==3.6.4.0 development
- black ==22.10.0 development
- cachecontrol ==0.12.11 development
- cached-property ==1.5.2 development
- celery ==5.2.7 development
- certifi ==2022.9.24 development
- cffi ==1.15.1 development
- charset-normalizer ==2.1.1 development
- click ==8.1.3 development
- click-didyoumean ==0.3.0 development
- click-plugins ==1.1.1 development
- click-repl ==0.2.0 development
- colorama ==0.4.5 development
- commonmark ==0.9.1 development
- coverage ==6.5.0 development
- cwltest ==2.2.20210901154959 development
- cycler ==0.11.0 development
- darker ==1.5.1 development
- defusedxml ==0.7.1 development
- deprecated ==1.2.13 development
- docutils ==0.16 development
- exceptiongroup ==1.0.0rc9 development
- fluent-logger ==0.10.0 development
- fonttools ==4.37.4 development
- frozenlist ==1.3.1 development
- future ==0.18.2 development
- h11 ==0.12.0 development
- httpcore ==0.15.0 development
- httpx ==0.23.0 development
- idna ==3.4 development
- imagesize ==1.4.1 development
- importlib-metadata ==4.13.0 development
- iniconfig ==1.1.1 development
- isodate ==0.6.1 development
- isort ==5.10.1 development
- jinja2 ==3.1.2 development
- junit-xml ==1.9 development
- kiwisolver ==1.4.4 development
- kombu ==5.2.4 development
- lockfile ==0.12.2 development
- lxml ==4.9.1 development
- markdown ==3.4.1 development
- markdown-it-reporter ==0.0.2 development
- markupsafe ==2.1.1 development
- matplotlib ==3.5.3 development
- mirakuru ==2.4.2 development
- mistune ==0.8.4 development
- msgpack ==1.0.4 development
- multidict ==6.0.2 development
- mypy-extensions ==0.4.3 development
- nose ==1.3.7 development
- nosehtml ==0.4.6 development
- numpy ==1.21.6 development
- outcome ==1.2.0 development
- packaging ==21.3 development
- pathspec ==0.10.1 development
- pillow ==9.2.0 development
- platformdirs ==2.5.2 development
- pluggy ==1.0.0 development
- port-for ==0.6.2 development
- prettytable ==3.4.1 development
- prompt-toolkit ==3.0.31 development
- psutil ==5.9.2 development
- py ==1.11.0 development
- pycparser ==2.21 development
- pygithub ==1.56 development
- pygments ==2.13.0 development
- pyjwt ==2.5.0 development
- pynacl ==1.5.0 development
- pyparsing ==3.0.9 development
- pysocks ==1.7.1 development
- pytest ==7.1.3 development
- pytest-asyncio ==0.19.0 development
- pytest-celery ==0.0.0 development
- pytest-cov ==4.0.0 development
- pytest-html ==3.1.1 development
- pytest-json-report ==1.5.0 development
- pytest-metadata ==2.0.2 development
- pytest-mock ==3.10.0 development
- pytest-postgresql ==4.1.1 development
- pytest-shard ==0.1.2 development
- python-dateutil ==2.8.2 development
- python-irodsclient ==1.1.5 development
- pytz ==2022.4 development
- rdflib ==6.0.2 development
- recommonmark ==0.7.1 development
- requests ==2.28.1 development
- responses ==0.22.0 development
- rfc3986 ==1.5.0 development
- ruamel-yaml ==0.17.17 development
- ruamel-yaml-clib ==0.2.6 development
- schema-salad ==8.3.20220916115321 development
- scipy ==1.7.3 development
- selenium ==4.5.0 development
- setuptools ==65.5.0 development
- setuptools-scm ==5.0.2 development
- six ==1.16.0 development
- sniffio ==1.3.0 development
- snowballstemmer ==2.2.0 development
- sortedcontainers ==2.4.0 development
- sphinx ==5.2.3 development
- sphinx-markdown-tables ==0.0.17 development
- sphinx-rtd-theme ==1.0.0 development
- sphinxcontrib-applehelp ==1.0.2 development
- sphinxcontrib-devhelp ==1.0.2 development
- sphinxcontrib-htmlhelp ==2.0.0 development
- sphinxcontrib-jsmath ==1.0.1 development
- sphinxcontrib-qthelp ==1.0.3 development
- sphinxcontrib-serializinghtml ==1.1.5 development
- statsd ==3.3.0 development
- testfixtures ==7.0.0 development
- tinydb ==4.7.0 development
- toml ==0.10.2 development
- tomli ==2.0.1 development
- trio ==0.22.0 development
- trio-websocket ==0.9.2 development
- tuspy ==1.0.0 development
- twill ==3.0.3 development
- typed-ast ==1.5.4 development
- types-toml ==0.10.8 development
- typing-extensions ==4.4.0 development
- urllib3 ==1.26.12 development
- vine ==5.0.0 development
- watchdog ==2.1.9 development
- wcwidth ==0.2.5 development
- wrapt ==1.14.1 development
- wsproto ==1.2.0 development
- yarl ==1.8.1 development
- zipp ==3.9.0 development
- attrs ==22.1.0
- flake8 ==5.0.4
- flake8-bugbear ==22.9.23
- importlib-metadata ==4.2.0
- mccabe ==0.7.0
- mypy ==0.982
- mypy-extensions ==0.4.3
- pycodestyle ==2.9.1
- pyflakes ==2.5.0
- tomli ==2.0.1
- typed-ast ==1.5.4
- types-Markdown ==3.4.2.1
- types-PyYAML ==6.0.12
- types-bleach ==5.0.3
- types-boto ==2.49.18
- types-contextvars ==2.4.7
- types-cryptography ==3.3.23
- types-dataclasses ==0.6.6
- types-docutils ==0.19.1
- types-paramiko ==2.11.6
- types-pkg-resources ==0.1.3
- types-python-dateutil ==2.8.19
- types-requests ==2.28.11.2
- types-six ==1.16.21
- types-urllib3 ==1.26.25
- typing_extensions ==4.4.0
- zipp ==3.9.0
- a2wsgi ==1.6.0
- adal ==1.2.7
- aiofiles ==22.1.0
- aiohttp ==3.8.3
- aiosignal ==1.2.0
- alembic ==1.8.1
- amqp ==5.1.1
- anyio ==3.6.1
- apispec ==6.0.0
- appdirs ==1.4.4
- arcp ==0.2.1
- argcomplete ==2.0.0
- async-timeout ==4.0.2
- asynctest ==0.13.0
- attmap ==0.13.2
- attrs ==22.1.0
- babel ==2.10.3
- bagit ==1.8.1
- bagit-profile ==1.3.1
- bcrypt ==4.0.1
- bdbag ==1.6.3
- beaker ==1.11.0
- billiard ==3.6.4.0
- bioblend ==1.0.0
- bleach ==5.0.1
- boltons ==21.0.0
- boto ==2.49.0
- bx-python ==0.9.0
- cachecontrol ==0.12.11
- cached-property ==1.5.2
- celery ==5.2.7
- certifi ==2022.9.24
- cffi ==1.15.1
- charset-normalizer ==2.1.1
- cheetah3 ==3.2.6.post1
- circus ==0.17.1
- click ==8.1.3
- click-didyoumean ==0.3.0
- click-plugins ==1.1.1
- click-repl ==0.2.0
- cloudauthz ==0.6.0
- cloudbridge ==3.1.0
- colorama ==0.4.5
- coloredlogs ==15.0.1
- commonmark ==0.9.1
- cryptography ==38.0.1
- cwltool ==3.1.20211107152837
- decorator ==5.1.1
- defusedxml ==0.7.1
- deprecation ==2.1.0
- dictobj ==0.4
- dnspython ==2.2.1
- docopt ==0.6.2
- docutils ==0.16
- ecdsa ==0.18.0
- edam-ontology ==1.25.2
- email-validator ==1.3.0
- fastapi ==0.85.1
- fastapi-utils ==0.2.1
- frozenlist ==1.3.1
- fs ==2.4.16
- funcsigs ==1.0.2
- future ==0.18.2
- galaxy-sequence-utils ==1.1.5
- galaxy2cwl ==0.1.4
- gravity ==0.13.5
- greenlet ==1.1.3.post0
- gunicorn ==20.1.0
- gxformat2 ==0.16.0
- h11 ==0.12.0
- h5py ==3.7.0
- humanfriendly ==10.0
- idna ==3.4
- importlib-metadata ==4.13.0
- importlib-resources ==5.10.0
- isa-rwval ==0.10.10
- isodate ==0.6.1
- jinja2 ==3.1.2
- jsonref ==0.3.0
- jsonschema ==4.16.0
- kombu ==5.2.4
- lagom ==2.0.0
- lockfile ==0.12.2
- lxml ==4.9.1
- mako ==1.2.3
- markdown ==3.4.1
- markupsafe ==2.1.1
- mercurial ==6.2.3
- mistune ==0.8.4
- mrcfile ==1.4.3
- msgpack ==1.0.4
- multidict ==6.0.2
- mypy-extensions ==0.4.3
- networkx ==2.5
- nodeenv ==1.7.0
- nose ==1.3.7
- numpy ==1.21.6
- oauthlib ==3.2.1
- oyaml ==1.0
- packaging ==21.3
- paramiko ==2.11.0
- parsley ==1.3
- paste ==3.5.2
- pastedeploy ==2.1.1
- pbr ==5.10.0
- pebble ==5.0.2
- pkgutil-resolve-name ==1.3.10
- prompt-toolkit ==3.0.31
- prov ==1.5.1
- psutil ==5.9.2
- pulsar-galaxy-lib ==0.15.0.dev0
- py ==1.11.0
- pyasn1 ==0.4.8
- pycparser ==2.21
- pycryptodome ==3.15.0
- pydantic ==1.10.2
- pydantic-tes ==0.1.5
- pydot ==1.4.2
- pyeventsystem ==0.1.0
- pyfaidx ==0.7.1
- pygments ==2.13.0
- pyjwt ==2.5.0
- pykwalify ==1.8.0
- pylibmagic ==0.2.1
- pynacl ==1.5.0
- pyparsing ==3.0.9
- pyreadline ==2.1
- pyreadline3 ==3.4.1
- pyrsistent ==0.18.1
- pysam ==0.19.1
- python-dateutil ==2.8.2
- python-jose ==3.3.0
- python-magic ==0.4.27
- python-multipart ==0.0.5
- python3-openid ==3.2.0
- pytz ==2022.4
- pyyaml ==6.0
- pyzmq ==24.0.1
- rdflib ==6.0.2
- refgenconf ==0.12.2
- repoze-lru ==0.7
- requests ==2.28.1
- requests-oauthlib ==1.3.1
- requests-toolbelt ==0.10.0
- rich ==12.6.0
- rocrate ==0.7.0
- routes ==2.5.1
- rsa ==4.9
- ruamel-yaml ==0.17.17
- ruamel-yaml-clib ==0.2.6
- schema-salad ==8.3.20220916115321
- setuptools ==65.5.0
- setuptools-scm ==5.0.2
- shellescape ==3.8.1
- six ==1.16.0
- sniffio ==1.3.0
- social-auth-core ==4.0.3
- sortedcontainers ==2.4.0
- sqlalchemy ==1.4.41
- sqlalchemy-migrate ==0.13.0
- sqlitedict ==2.0.0
- sqlparse ==0.4.3
- starlette ==0.20.4
- starlette-context ==0.3.4
- supervisor ==4.2.4
- svgwrite ==1.4.3
- tempita ==0.5.2
- tenacity ==8.1.0
- tifffile ==2021.11.2
- tinydb ==4.7.0
- tornado ==6.2
- tqdm ==4.64.1
- tuspy ==1.0.0
- tuswsgi ==0.5.4
- typing-extensions ==4.4.0
- tzlocal ==2.1
- ubiquerg ==0.6.2
- urllib3 ==1.26.12
- uvicorn ==0.18.3
- uvloop ==0.17.0
- vine ==5.0.0
- wcwidth ==0.2.5
- webencodings ==0.5.1
- webob ==1.8.7
- whoosh ==2.7.4
- yacman ==0.8.4
- yarl ==1.8.1
- zipp ==3.9.0
- zipstream-new ==1.1.8
- mock-ssh-server * test
- pykwalify * test
- pytest * test
- testfixtures * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- pytest * test
- beaker * test
- pytest * test
- pytest-mock * test
- pytest * test
- pytest * test
- httpx * test
- pytest * test
- pytest-asyncio * test
pyproject.toml
pypi
- Babel *
- Beaker 1.11.0
- Cheetah3 !=3.2.6.post2
- Mako *
- Markdown *
- MarkupSafe *
- Mercurial *
- Parsley *
- Paste *
- PyJWT *
- PyYAML *
- Routes *
- SQLAlchemy >=1.4.25,<2
- WebOb *
- Whoosh *
- a2wsgi *
- aiofiles *
- alembic *
- apispec *
- bdbag >=1.6.3
- bioblend *
- bleach *
- boltons *
- boto *
- bx-python *
- celery *
- circus *
- cloudauthz ==0.6.0
- cloudbridge *
- cwltool ==3.1.20211107152837
- dictobj *
- docutils !=0.17, !=0.17.1
- edam-ontology *
- fastapi >=0.71.0
- fastapi-utils *
- fs *
- future *
- galaxy_sequence_utils *
- gravity >=0.10.0
- gunicorn *
- gxformat2 *
- h5py *
- importlib_resources *
- isa-rwval *
- kombu *
- lagom *
- mrcfile *
- nodeenv *
- nose *
- numpy *
- paramiko !=2.9.0, !=2.9.1
- pebble *
- psutil *
- pulsar-galaxy-lib >=0.15.0.dev0
- pycryptodome *
- pydantic *
- pykwalify *
- pylibmagic *
- pyparsing *
- pysam *
- python >=3.7,<3.11
- python-dateutil *
- python-magic *
- python-multipart *
- refgenconf >=0.12.0
- requests *
- rocrate *
- schema-salad !=8.3.20220721194857
- social-auth-core ==4.0.3
- sortedcontainers *
- sqlalchemy-migrate *
- sqlitedict *
- sqlparse *
- starlette *
- starlette-context *
- svgwrite *
- tifffile *
- tuswsgi *
- typing-extensions *
- uvicorn *
- uvloop *
- zipstream-new *