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GitHub / eleonore-schneeg / scFlow-1
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eleonore-schneeg%2FscFlow-1
Fork of neurogenomics/scFlow
Stars: 0
Forks: 0
Open Issues: 0
License: other
Language:
Repo Size: 47.2 MB
Dependencies:
99
Created: about 1 year ago
Updated: 9 months ago
Last pushed: about 1 year ago
Last synced: 9 months ago
Files
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Readme
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Dependencies
.github/workflows/r_package.yaml
actions
- actions/checkout v2 composite
- docker/build-push-action v2 composite
- docker/login-action v1 composite
- docker/setup-buildx-action v1 composite
- r-lib/actions/setup-r v1 composite
- actions/checkout v2 composite
- docker/build-push-action v2 composite
- docker/login-action v1 composite
- docker/setup-buildx-action v1 composite
- r-lib/actions/setup-r v1 composite
DESCRIPTION
cran
- BiocGenerics * imports
- DT * imports
- DelayedArray * imports
- DelayedMatrixStats * imports
- DirichletReg * imports
- DoubletFinder * imports
- DropletUtils * imports
- EWCE * imports
- GenomicRanges * imports
- IRanges * imports
- MAST * imports
- Matrix * imports
- Matrix.utils * imports
- R.utils * imports
- RANN.L1 * imports
- ROntoTools * imports
- RcppParallel * imports
- Rtsne * imports
- S4Vectors * imports
- Seurat * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- UpSetR * imports
- WebGestaltR * imports
- assertthat * imports
- batchelor * imports
- bib2df * imports
- biomaRt * imports
- cli * imports
- cowplot * imports
- data.table * imports
- doParallel * imports
- dplyr * imports
- edgeR * imports
- english * imports
- enrichR * imports
- forcats * imports
- foreach * imports
- formattable * imports
- future * imports
- future.apply * imports
- gdtools * imports
- ggdendro * imports
- ggplot2 * imports
- ggpubr * imports
- ggrepel * imports
- ggridges * imports
- graph * imports
- graphite * imports
- httr * imports
- igraph * imports
- kBET * imports
- leaflet * imports
- limma * imports
- magrittr * imports
- methods * imports
- monocle3 * imports
- nVennR * imports
- paletteer * imports
- patchwork * imports
- plotly * imports
- plyr * imports
- preprocessCore * imports
- prettydoc * imports
- purrr * imports
- qs * imports
- rlang * imports
- rliger * imports
- rmarkdown * imports
- scales * imports
- scater * imports
- sctransform * imports
- stats * imports
- stringr * imports
- threejs * imports
- tibble * imports
- tidyr * imports
- tidyselect * imports
- utils * imports
- uwot * imports
- vroom * imports
- BiocStyle * suggests
- covr * suggests
- knitr * suggests
- scFlowData * suggests
- scFlowExamples * suggests
- spelling * suggests
- testthat >= 2.1.0 suggests
Dockerfile
docker
- rocker/rstudio latest build