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GitHub / flatironinstitute / CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/flatironinstitute%2FCaImAn
Stars: 603
Forks: 358
Open Issues: 61
License: gpl-2.0
Language: Python
Repo Size: 563 MB
Dependencies:
20
Created: over 8 years ago
Updated: 1 day ago
Last pushed: 2 days ago
Last synced: 1 day ago
Commit Stats
Commits: 3370
Authors: 78
Mean commits per author: 43.21
Development Distribution Score: 0.723
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/flatironinstitute/CaImAn
Topics: 2-photon, calcium-imaging, cnmf, deconvolution, motion-correction, source-extraction
Files
Dependencies
- continuumio/anaconda3 latest build
- cython *
- future *
- h5py *
- holoviews *
- ipyparallel *
- matplotlib *
- numpy *
- numpydoc *
- opencv-python *
- peakutils *
- pims *
- psutil *
- pynwb *
- scikit-image *
- scikit-learn *
- scipy *
- tensorflow *
- tifffile *
- tqdm *